Hb_000422_160

Information

Type -
Description -
Location Contig422: 227177-231294
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22540g
description POPTRDRAFT_840891; hypothetical protein
nr
ID XP_012089559.1
description PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID A0A067JGP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00527 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41734: 227120-231257 , PASA_asmbl_41735: 226957-231257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_160 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
2 Hb_160715_010 0.1456931755 - - -
3 Hb_031284_030 0.2042948391 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000028_490 0.2065371358 - - calmodulin-like protein 6a [Populus trichocarpa]
5 Hb_008790_040 0.208065137 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
6 Hb_000062_530 0.2157743539 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
7 Hb_000540_160 0.2164519216 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
8 Hb_179960_010 0.2184680687 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
9 Hb_000244_150 0.2255409124 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
10 Hb_006351_020 0.2288857733 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_001902_200 0.2330480505 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
12 Hb_001178_090 0.2332334958 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
13 Hb_001780_030 0.2340635082 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
14 Hb_001119_070 0.2380785136 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
15 Hb_003813_060 0.2382410738 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000086_290 0.2401463262 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
17 Hb_000203_070 0.2422144377 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
18 Hb_004223_140 0.2424996308 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_012395_050 0.2440167935 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_001545_130 0.2442078946 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000422_160 Hb_000422_160 Hb_160715_010 Hb_160715_010 Hb_000422_160--Hb_160715_010 Hb_031284_030 Hb_031284_030 Hb_000422_160--Hb_031284_030 Hb_000028_490 Hb_000028_490 Hb_000422_160--Hb_000028_490 Hb_008790_040 Hb_008790_040 Hb_000422_160--Hb_008790_040 Hb_000062_530 Hb_000062_530 Hb_000422_160--Hb_000062_530 Hb_000540_160 Hb_000540_160 Hb_000422_160--Hb_000540_160 Hb_001711_050 Hb_001711_050 Hb_160715_010--Hb_001711_050 Hb_001437_140 Hb_001437_140 Hb_160715_010--Hb_001437_140 Hb_009541_010 Hb_009541_010 Hb_160715_010--Hb_009541_010 Hb_000256_070 Hb_000256_070 Hb_160715_010--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_160715_010--Hb_138462_010 Hb_006351_020 Hb_006351_020 Hb_031284_030--Hb_006351_020 Hb_000023_110 Hb_000023_110 Hb_031284_030--Hb_000023_110 Hb_001450_040 Hb_001450_040 Hb_031284_030--Hb_001450_040 Hb_000152_190 Hb_000152_190 Hb_031284_030--Hb_000152_190 Hb_006889_030 Hb_006889_030 Hb_031284_030--Hb_006889_030 Hb_000327_360 Hb_000327_360 Hb_031284_030--Hb_000327_360 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_158092_040 Hb_158092_040 Hb_008790_040--Hb_158092_040 Hb_001310_050 Hb_001310_050 Hb_008790_040--Hb_001310_050 Hb_008066_080 Hb_008066_080 Hb_008790_040--Hb_008066_080 Hb_008790_040--Hb_006889_030 Hb_006153_180 Hb_006153_180 Hb_008790_040--Hb_006153_180 Hb_002301_110 Hb_002301_110 Hb_008790_040--Hb_002301_110 Hb_003710_020 Hb_003710_020 Hb_000062_530--Hb_003710_020 Hb_001545_130 Hb_001545_130 Hb_000062_530--Hb_001545_130 Hb_004109_050 Hb_004109_050 Hb_000062_530--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_000062_530--Hb_000152_710 Hb_019280_020 Hb_019280_020 Hb_000062_530--Hb_019280_020 Hb_012362_030 Hb_012362_030 Hb_000062_530--Hb_012362_030 Hb_002900_180 Hb_002900_180 Hb_000540_160--Hb_002900_180 Hb_003728_110 Hb_003728_110 Hb_000540_160--Hb_003728_110 Hb_000540_160--Hb_000028_490 Hb_124951_020 Hb_124951_020 Hb_000540_160--Hb_124951_020 Hb_002490_030 Hb_002490_030 Hb_000540_160--Hb_002490_030 Hb_004147_070 Hb_004147_070 Hb_000540_160--Hb_004147_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2553 1.17289 5.80633 15.6697 0.0417906 2.49387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110039 0.105839 4.28069 6.55441 2.92301

CAGE analysis