Hb_000424_010

Information

Type -
Description -
Location Contig424: 12670-21466
Sequence    

Annotation

kegg
ID rcu:RCOM_0707280
description hypothetical protein
nr
ID XP_012077196.1
description PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
swissprot
ID Q9SMY8
description F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=2 SV=2
trembl
ID A0A067KCT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07602 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41888: 12820-21460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_010 0.0 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
2 Hb_000035_040 0.0476095792 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
3 Hb_002652_040 0.0509068277 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
4 Hb_002221_050 0.0528649859 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
5 Hb_000529_260 0.0550542977 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
6 Hb_000139_250 0.0603314749 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
7 Hb_175338_020 0.0632004501 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
8 Hb_007885_070 0.0648351095 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
9 Hb_031754_010 0.0667277973 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
10 Hb_003581_120 0.0673579947 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_000417_160 0.0677004805 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
12 Hb_002477_130 0.0678397091 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022408_010 0.0679605736 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
14 Hb_000343_210 0.0684696641 - - ran-binding protein, putative [Ricinus communis]
15 Hb_001541_020 0.0704854512 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
16 Hb_004162_280 0.0711198235 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
17 Hb_000329_130 0.0712870497 - - beta-tubulin cofactor d, putative [Ricinus communis]
18 Hb_001771_120 0.0714579807 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_000510_310 0.0729949691 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
20 Hb_147737_010 0.073624905 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000424_010 Hb_000424_010 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_000035_040--Hb_002652_040 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_002652_040--Hb_000331_190 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_002652_040--Hb_175338_020 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000529_260--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000529_260--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000529_260--Hb_000510_310 Hb_000529_260--Hb_000320_200 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_144787_030 Hb_144787_030 Hb_000139_250--Hb_144787_030 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.658 23.8473 12.7233 10.9667 47.6628 39.5014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6057 11.654 17.312 16.8704 11.6856

CAGE analysis