Hb_000424_020

Information

Type -
Description -
Location Contig424: 32569-36152
Sequence    

Annotation

kegg
ID tcc:TCM_037386
description hypothetical protein
nr
ID XP_007012419.1
description Uncharacterized protein TCM_037386 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GKU7
description Uncharacterized protein OS=Theobroma cacao GN=TCM_037386 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41890: 32844-36025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_020 0.0 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
2 Hb_000436_100 0.0834823061 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
3 Hb_029142_030 0.1038426853 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
4 Hb_002255_040 0.1048879352 - - PREDICTED: biotin synthase [Jatropha curcas]
5 Hb_011249_030 0.1127384694 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
6 Hb_001930_030 0.1158985555 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
7 Hb_000003_300 0.1170186982 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
8 Hb_007101_160 0.1193832601 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003581_210 0.1257065733 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
10 Hb_005975_010 0.1281251948 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
11 Hb_000390_310 0.1292856435 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
12 Hb_001956_040 0.1299282275 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004128_200 0.1304811168 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
14 Hb_000077_010 0.1327022135 - - unnamed protein product [Vitis vinifera]
15 Hb_002232_190 0.1331004111 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000287_050 0.13637757 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
17 Hb_006555_040 0.1371671831 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
18 Hb_000959_220 0.1397303617 - - zinc finger protein, putative [Ricinus communis]
19 Hb_003849_040 0.1406709537 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
20 Hb_005731_110 0.1416451791 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000424_020 Hb_000424_020 Hb_000436_100 Hb_000436_100 Hb_000424_020--Hb_000436_100 Hb_029142_030 Hb_029142_030 Hb_000424_020--Hb_029142_030 Hb_002255_040 Hb_002255_040 Hb_000424_020--Hb_002255_040 Hb_011249_030 Hb_011249_030 Hb_000424_020--Hb_011249_030 Hb_001930_030 Hb_001930_030 Hb_000424_020--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000424_020--Hb_000003_300 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_000436_100--Hb_029142_030 Hb_000436_100--Hb_001930_030 Hb_000436_100--Hb_000003_300 Hb_000436_100--Hb_002255_040 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_029142_030--Hb_002255_040 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_006555_040 Hb_006555_040 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_002255_040--Hb_028207_020 Hb_003581_210 Hb_003581_210 Hb_002255_040--Hb_003581_210 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_001930_030--Hb_006555_040 Hb_005731_110 Hb_005731_110 Hb_001930_030--Hb_005731_110 Hb_000445_070 Hb_000445_070 Hb_001930_030--Hb_000445_070 Hb_015292_040 Hb_015292_040 Hb_001930_030--Hb_015292_040 Hb_004994_080 Hb_004994_080 Hb_001930_030--Hb_004994_080 Hb_000003_300--Hb_004128_200 Hb_005389_100 Hb_005389_100 Hb_000003_300--Hb_005389_100 Hb_002228_110 Hb_002228_110 Hb_000003_300--Hb_002228_110 Hb_000836_430 Hb_000836_430 Hb_000003_300--Hb_000836_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3105 6.54423 26.1344 2.63204 10.5554 6.78287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74429 5.55306 2.9413 2.78066 6.47125

CAGE analysis