Hb_000424_030

Information

Type -
Description -
Location Contig424: 37676-38496
Sequence    

Annotation

kegg
ID rcu:RCOM_0707450
description hypothetical protein
nr
ID XP_002516141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQX2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41891: 37697-38351 , PASA_asmbl_41892: 38594-38767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006829_070 0.1036646559 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
3 Hb_000603_020 0.1119195257 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
4 Hb_000271_220 0.1223416136 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
5 Hb_002217_320 0.1240317814 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
6 Hb_000622_330 0.1283641184 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
7 Hb_006925_050 0.1290251758 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
8 Hb_003001_130 0.1297240902 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004631_170 0.1315052948 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002026_020 0.1339358617 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
11 Hb_000928_120 0.1340250982 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
12 Hb_000177_110 0.1340471891 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
13 Hb_012807_150 0.1342898889 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
14 Hb_150440_010 0.1376563488 - - -
15 Hb_003680_030 0.1408706404 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
16 Hb_000740_090 0.1414889027 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004007_070 0.1442968868 - - adenylsulfate kinase, putative [Ricinus communis]
18 Hb_012762_060 0.1461467608 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
19 Hb_000365_280 0.1462354141 - - calcium binding protein/cast, putative [Ricinus communis]
20 Hb_002325_060 0.1477550529 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]

Gene co-expression network

sample Hb_000424_030 Hb_000424_030 Hb_006829_070 Hb_006829_070 Hb_000424_030--Hb_006829_070 Hb_000603_020 Hb_000603_020 Hb_000424_030--Hb_000603_020 Hb_000271_220 Hb_000271_220 Hb_000424_030--Hb_000271_220 Hb_002217_320 Hb_002217_320 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_006925_050 Hb_006925_050 Hb_000424_030--Hb_006925_050 Hb_012762_060 Hb_012762_060 Hb_006829_070--Hb_012762_060 Hb_002026_020 Hb_002026_020 Hb_006829_070--Hb_002026_020 Hb_003680_030 Hb_003680_030 Hb_006829_070--Hb_003680_030 Hb_006829_070--Hb_002217_320 Hb_006829_070--Hb_006925_050 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000271_220--Hb_012807_150 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_000271_220--Hb_003001_130 Hb_002217_320--Hb_012762_060 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_002217_320--Hb_003680_030 Hb_010050_020 Hb_010050_020 Hb_000622_330--Hb_010050_020 Hb_000928_120 Hb_000928_120 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_004522_030 Hb_004522_030 Hb_000622_330--Hb_004522_030 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006925_050--Hb_001847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34093 6.04327 8.58508 19.6133 1.2236 1.71533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10784 2.09043 0.52178 2.30903 6.13425

CAGE analysis