Hb_000424_050

Information

Type -
Description -
Location Contig424: 55980-65000
Sequence    

Annotation

kegg
ID rcu:RCOM_0707480
description erecta, putative (EC:1.3.1.74)
nr
ID XP_002516144.1
description erecta, putative [Ricinus communis]
swissprot
ID Q42371
description LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1
trembl
ID B9RQX5
description Erecta, putative OS=Ricinus communis GN=RCOM_0707480 PE=3 SV=1
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein kinase erecta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41896: 56650-56793 , PASA_asmbl_41897: 56872-64935 , PASA_asmbl_41898: 62363-62877 , PASA_asmbl_41899: 60517-60595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_050 0.0 - - erecta, putative [Ricinus communis]
2 Hb_002078_310 0.1110013555 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
3 Hb_000028_010 0.1218555847 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001699_090 0.1219370455 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011859_010 0.1240564409 - - hypothetical protein VITISV_027923 [Vitis vinifera]
6 Hb_000051_130 0.1271400918 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_008226_050 0.1276386303 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
8 Hb_000193_170 0.1309654876 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
9 Hb_000445_320 0.1315130573 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
10 Hb_000364_140 0.1347202106 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
11 Hb_002453_040 0.1351904849 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
12 Hb_059832_010 0.13554825 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
13 Hb_000375_200 0.1357786773 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
14 Hb_000187_020 0.1359600705 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
15 Hb_000069_510 0.1379987399 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
16 Hb_052530_010 0.1392637732 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
17 Hb_000130_400 0.140240178 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
18 Hb_003641_040 0.1420631011 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
19 Hb_000675_130 0.1422627026 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
20 Hb_006332_030 0.1441145534 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]

Gene co-expression network

sample Hb_000424_050 Hb_000424_050 Hb_002078_310 Hb_002078_310 Hb_000424_050--Hb_002078_310 Hb_000028_010 Hb_000028_010 Hb_000424_050--Hb_000028_010 Hb_001699_090 Hb_001699_090 Hb_000424_050--Hb_001699_090 Hb_011859_010 Hb_011859_010 Hb_000424_050--Hb_011859_010 Hb_000051_130 Hb_000051_130 Hb_000424_050--Hb_000051_130 Hb_008226_050 Hb_008226_050 Hb_000424_050--Hb_008226_050 Hb_002078_310--Hb_011859_010 Hb_002078_310--Hb_001699_090 Hb_001564_100 Hb_001564_100 Hb_002078_310--Hb_001564_100 Hb_006332_030 Hb_006332_030 Hb_002078_310--Hb_006332_030 Hb_011218_020 Hb_011218_020 Hb_002078_310--Hb_011218_020 Hb_005649_050 Hb_005649_050 Hb_002078_310--Hb_005649_050 Hb_018663_010 Hb_018663_010 Hb_000028_010--Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_000028_010--Hb_010737_030 Hb_000028_010--Hb_000051_130 Hb_000496_100 Hb_000496_100 Hb_000028_010--Hb_000496_100 Hb_102900_010 Hb_102900_010 Hb_000028_010--Hb_102900_010 Hb_008165_010 Hb_008165_010 Hb_000028_010--Hb_008165_010 Hb_002110_070 Hb_002110_070 Hb_001699_090--Hb_002110_070 Hb_001699_090--Hb_011859_010 Hb_001699_090--Hb_006332_030 Hb_001699_090--Hb_001564_100 Hb_008406_150 Hb_008406_150 Hb_001699_090--Hb_008406_150 Hb_011859_010--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011859_010--Hb_028995_020 Hb_011859_010--Hb_011218_020 Hb_011859_010--Hb_001564_100 Hb_000175_110 Hb_000175_110 Hb_011859_010--Hb_000175_110 Hb_005918_020 Hb_005918_020 Hb_011859_010--Hb_005918_020 Hb_000120_260 Hb_000120_260 Hb_000051_130--Hb_000120_260 Hb_000187_020 Hb_000187_020 Hb_000051_130--Hb_000187_020 Hb_000051_130--Hb_010737_030 Hb_000051_130--Hb_000496_100 Hb_000051_130--Hb_018663_010 Hb_059832_010 Hb_059832_010 Hb_000051_130--Hb_059832_010 Hb_000675_130 Hb_000675_130 Hb_008226_050--Hb_000675_130 Hb_003641_040 Hb_003641_040 Hb_008226_050--Hb_003641_040 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0314443 0.285667 30.9203 8.76409 0.0127197 0.0176636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.17921 0 0.0674551 2.58884

CAGE analysis