Hb_000424_060

Information

Type -
Description -
Location Contig424: 86207-103478
Sequence    

Annotation

kegg
ID rcu:RCOM_0707600
description myosin XI, putative
nr
ID XP_012077186.1
description PREDICTED: myosin-15 [Jatropha curcas]
swissprot
ID Q0WPU1
description Myosin-15 OS=Arabidopsis thaliana GN=XI-I PE=1 SV=1
trembl
ID A0A067KD06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07593 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41901: 86454-86979 , PASA_asmbl_41902: 88280-89305 , PASA_asmbl_41903: 89323-97325 , PASA_asmbl_41904: 92707-95608 , PASA_asmbl_41905: 97333-104155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_060 0.0 - - PREDICTED: myosin-15 [Jatropha curcas]
2 Hb_002820_030 0.0791925553 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
3 Hb_003142_030 0.0793334031 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
4 Hb_000181_090 0.0923402 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
5 Hb_001951_200 0.0929991292 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
6 Hb_007533_010 0.0969010886 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
7 Hb_000010_110 0.0970339505 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
8 Hb_011457_150 0.0984152023 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
9 Hb_007885_060 0.1011861505 - - replication factor C 40 kDa family protein [Populus trichocarpa]
10 Hb_000069_380 0.1035269459 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_001225_030 0.1046226093 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
12 Hb_002893_040 0.1071340234 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
13 Hb_142368_010 0.1084372168 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
14 Hb_000416_110 0.1087185907 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
15 Hb_004586_300 0.1091998098 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
16 Hb_007590_020 0.1097508254 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
17 Hb_004837_180 0.1100025177 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_001500_060 0.1102540719 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
19 Hb_000645_170 0.1108220302 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021576_100 0.1112348624 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000424_060 Hb_000424_060 Hb_002820_030 Hb_002820_030 Hb_000424_060--Hb_002820_030 Hb_003142_030 Hb_003142_030 Hb_000424_060--Hb_003142_030 Hb_000181_090 Hb_000181_090 Hb_000424_060--Hb_000181_090 Hb_001951_200 Hb_001951_200 Hb_000424_060--Hb_001951_200 Hb_007533_010 Hb_007533_010 Hb_000424_060--Hb_007533_010 Hb_000010_110 Hb_000010_110 Hb_000424_060--Hb_000010_110 Hb_000738_020 Hb_000738_020 Hb_002820_030--Hb_000738_020 Hb_011457_150 Hb_011457_150 Hb_002820_030--Hb_011457_150 Hb_012239_020 Hb_012239_020 Hb_002820_030--Hb_012239_020 Hb_002820_030--Hb_000010_110 Hb_000069_380 Hb_000069_380 Hb_002820_030--Hb_000069_380 Hb_000696_090 Hb_000696_090 Hb_003142_030--Hb_000696_090 Hb_152175_010 Hb_152175_010 Hb_003142_030--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_003142_030--Hb_003001_080 Hb_001227_030 Hb_001227_030 Hb_003142_030--Hb_001227_030 Hb_003929_280 Hb_003929_280 Hb_003142_030--Hb_003929_280 Hb_007885_060 Hb_007885_060 Hb_000181_090--Hb_007885_060 Hb_000181_090--Hb_007533_010 Hb_000105_050 Hb_000105_050 Hb_000181_090--Hb_000105_050 Hb_002284_150 Hb_002284_150 Hb_000181_090--Hb_002284_150 Hb_000053_110 Hb_000053_110 Hb_000181_090--Hb_000053_110 Hb_002893_040 Hb_002893_040 Hb_001951_200--Hb_002893_040 Hb_027905_020 Hb_027905_020 Hb_001951_200--Hb_027905_020 Hb_000227_270 Hb_000227_270 Hb_001951_200--Hb_000227_270 Hb_002413_010 Hb_002413_010 Hb_001951_200--Hb_002413_010 Hb_000173_310 Hb_000173_310 Hb_001951_200--Hb_000173_310 Hb_000025_780 Hb_000025_780 Hb_007533_010--Hb_000025_780 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_000227_170 Hb_000227_170 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6719 10.2713 11.26 4.67401 4.48578 5.96199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.82608 6.63551 3.87599 4.07265 5.78282

CAGE analysis