Hb_000424_200

Information

Type -
Description -
Location Contig424: 227289-233315
Sequence    

Annotation

kegg
ID rcu:RCOM_0707840
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP34012.1
description hypothetical protein JCGZ_07583 [Jatropha curcas]
swissprot
ID O64843
description Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1
trembl
ID A0A067KCZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07583 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41926: 227375-232962 , PASA_asmbl_41927: 227375-232974 , PASA_asmbl_41928: 230913-232974 , PASA_asmbl_41929: 228151-228541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_200 0.0 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
2 Hb_013399_050 0.0731127421 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
3 Hb_158445_010 0.0824183221 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
4 Hb_007037_020 0.0837322401 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
5 Hb_000327_060 0.0847718129 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
6 Hb_006355_040 0.0879278616 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
7 Hb_005843_140 0.0880854204 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
8 Hb_006198_070 0.0941996379 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
9 Hb_163256_020 0.0943137632 - - fructokinase [Manihot esculenta]
10 Hb_002016_080 0.0946578868 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
11 Hb_002701_010 0.0947087354 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_008566_050 0.0954222387 - - phosphoglycerate mutase, putative [Ricinus communis]
13 Hb_011021_040 0.0967743181 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
14 Hb_005162_060 0.0968248132 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
15 Hb_006256_030 0.0973311458 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
16 Hb_013405_140 0.1001714983 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
17 Hb_002232_060 0.101281377 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
18 Hb_001718_030 0.1021802666 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
19 Hb_011485_020 0.1027537267 - - protein with unknown function [Ricinus communis]
20 Hb_000733_180 0.1047896764 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000424_200 Hb_000424_200 Hb_013399_050 Hb_013399_050 Hb_000424_200--Hb_013399_050 Hb_158445_010 Hb_158445_010 Hb_000424_200--Hb_158445_010 Hb_007037_020 Hb_007037_020 Hb_000424_200--Hb_007037_020 Hb_000327_060 Hb_000327_060 Hb_000424_200--Hb_000327_060 Hb_006355_040 Hb_006355_040 Hb_000424_200--Hb_006355_040 Hb_005843_140 Hb_005843_140 Hb_000424_200--Hb_005843_140 Hb_011021_040 Hb_011021_040 Hb_013399_050--Hb_011021_040 Hb_013399_050--Hb_007037_020 Hb_013405_140 Hb_013405_140 Hb_013399_050--Hb_013405_140 Hb_013399_050--Hb_000327_060 Hb_013399_050--Hb_158445_010 Hb_158445_010--Hb_000327_060 Hb_004324_090 Hb_004324_090 Hb_158445_010--Hb_004324_090 Hb_005162_060 Hb_005162_060 Hb_158445_010--Hb_005162_060 Hb_004143_150 Hb_004143_150 Hb_158445_010--Hb_004143_150 Hb_000310_020 Hb_000310_020 Hb_158445_010--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_158445_010--Hb_163256_020 Hb_007037_020--Hb_011021_040 Hb_007037_020--Hb_013405_140 Hb_001172_120 Hb_001172_120 Hb_007037_020--Hb_001172_120 Hb_002016_080 Hb_002016_080 Hb_007037_020--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_007037_020--Hb_011485_020 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_012423_030 Hb_012423_030 Hb_000327_060--Hb_012423_030 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_006355_040--Hb_005843_140 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070 Hb_005843_140--Hb_006198_070 Hb_044653_040 Hb_044653_040 Hb_005843_140--Hb_044653_040 Hb_005843_140--Hb_003669_020 Hb_005843_140--Hb_002968_040 Hb_000505_130 Hb_000505_130 Hb_005843_140--Hb_000505_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7585 52.4202 57.0707 49.3483 20.4117 27.6063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8371 146.932 103.364 49.2294 54.9006

CAGE analysis