Hb_000424_230

Information

Type -
Description -
Location Contig424: 249767-254866
Sequence    

Annotation

kegg
ID ath:AT2G26260
description 3BETAHSD/D2; 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
nr
ID XP_006576286.1
description PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
swissprot
ID -
description -
trembl
ID K7KBW1
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0003854
description 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41933: 249674-267781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_230 0.0 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
2 Hb_005368_010 0.0620341313 - - PREDICTED: umecyanin-like [Jatropha curcas]
3 Hb_001689_020 0.0814426235 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
4 Hb_015763_030 0.0840948128 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002942_080 0.0902628065 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
6 Hb_007668_040 0.0913484163 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
7 Hb_001279_330 0.0914031419 - - Protein bem46, putative [Ricinus communis]
8 Hb_000116_170 0.0934001375 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
9 Hb_000364_060 0.0946886044 - - JHL03K20.4 [Jatropha curcas]
10 Hb_001341_050 0.0952873769 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
11 Hb_079326_010 0.1010272697 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
12 Hb_123954_010 0.1017217043 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
13 Hb_083043_010 0.107406455 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
14 Hb_005271_080 0.1075736926 - - receptor kinase, putative [Ricinus communis]
15 Hb_091384_010 0.1082571568 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
16 Hb_001863_110 0.1087939699 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_004881_050 0.1091600754 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_004450_010 0.1092105621 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
19 Hb_002273_130 0.1093621173 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
20 Hb_000059_150 0.1097268179 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000424_230 Hb_000424_230 Hb_005368_010 Hb_005368_010 Hb_000424_230--Hb_005368_010 Hb_001689_020 Hb_001689_020 Hb_000424_230--Hb_001689_020 Hb_015763_030 Hb_015763_030 Hb_000424_230--Hb_015763_030 Hb_002942_080 Hb_002942_080 Hb_000424_230--Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_000424_230--Hb_007668_040 Hb_001279_330 Hb_001279_330 Hb_000424_230--Hb_001279_330 Hb_079326_010 Hb_079326_010 Hb_005368_010--Hb_079326_010 Hb_001341_050 Hb_001341_050 Hb_005368_010--Hb_001341_050 Hb_005368_010--Hb_001279_330 Hb_005271_080 Hb_005271_080 Hb_005368_010--Hb_005271_080 Hb_000116_170 Hb_000116_170 Hb_005368_010--Hb_000116_170 Hb_002671_100 Hb_002671_100 Hb_001689_020--Hb_002671_100 Hb_005016_170 Hb_005016_170 Hb_001689_020--Hb_005016_170 Hb_000123_090 Hb_000123_090 Hb_001689_020--Hb_000123_090 Hb_001341_120 Hb_001341_120 Hb_001689_020--Hb_001341_120 Hb_028390_010 Hb_028390_010 Hb_001689_020--Hb_028390_010 Hb_000029_320 Hb_000029_320 Hb_015763_030--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_002070_070 Hb_002070_070 Hb_015763_030--Hb_002070_070 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_010180_040 Hb_010180_040 Hb_015763_030--Hb_010180_040 Hb_002942_080--Hb_007668_040 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_024990_010 Hb_024990_010 Hb_002942_080--Hb_024990_010 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_000364_060 Hb_000364_060 Hb_007668_040--Hb_000364_060 Hb_007668_040--Hb_001341_050 Hb_007668_040--Hb_024990_010 Hb_007668_040--Hb_003006_060 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6634 6.45453 9.1325 15.1138 31.9484 36.9414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4039 7.72638 7.21957 9.70042 5.35476

CAGE analysis