Hb_000424_250

Information

Type -
Description -
Location Contig424: 276467-282419
Sequence    

Annotation

kegg
ID rcu:RCOM_0707890
description DNA cross-link repair protein pso2/snm1, putative
nr
ID XP_012077167.1
description PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
swissprot
ID Q5QJC4
description DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1
trembl
ID A0A067KCQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07577 PE=4 SV=1
Gene Ontology
ID GO:0005515
description dna cross-link repair protein snm1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41934: 276622-276923 , PASA_asmbl_41935: 277086-278682 , PASA_asmbl_41936: 278904-279960 , PASA_asmbl_41937: 281046-281329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_250 0.0 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
2 Hb_001246_090 0.1167533352 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
3 Hb_001184_090 0.1191375403 - - PREDICTED: TIP41-like protein [Jatropha curcas]
4 Hb_000576_010 0.1272263222 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
5 Hb_007576_040 0.1315916124 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
6 Hb_000494_020 0.1358351198 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
7 Hb_032264_110 0.1378468449 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
8 Hb_001328_040 0.1380725966 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
9 Hb_010655_010 0.1394457743 - - Cycloartenol synthase, putative [Ricinus communis]
10 Hb_002205_080 0.139744526 - - 40S ribosomal protein S26, putative [Ricinus communis]
11 Hb_004994_170 0.1398701264 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
12 Hb_003363_110 0.1401168587 - - protein with unknown function [Ricinus communis]
13 Hb_001360_040 0.1407788827 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
14 Hb_001396_180 0.1407931866 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
15 Hb_007477_070 0.1409255425 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
16 Hb_000665_240 0.1412904096 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_000454_050 0.1413385412 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
18 Hb_000270_270 0.1413400567 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
19 Hb_000302_010 0.1415410651 - - Vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_001279_310 0.1415717018 - - hypothetical protein JCGZ_10212 [Jatropha curcas]

Gene co-expression network

sample Hb_000424_250 Hb_000424_250 Hb_001246_090 Hb_001246_090 Hb_000424_250--Hb_001246_090 Hb_001184_090 Hb_001184_090 Hb_000424_250--Hb_001184_090 Hb_000576_010 Hb_000576_010 Hb_000424_250--Hb_000576_010 Hb_007576_040 Hb_007576_040 Hb_000424_250--Hb_007576_040 Hb_000494_020 Hb_000494_020 Hb_000424_250--Hb_000494_020 Hb_032264_110 Hb_032264_110 Hb_000424_250--Hb_032264_110 Hb_001135_050 Hb_001135_050 Hb_001246_090--Hb_001135_050 Hb_001246_090--Hb_000494_020 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_003392_040 Hb_003392_040 Hb_001246_090--Hb_003392_040 Hb_002105_090 Hb_002105_090 Hb_001246_090--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_001246_090--Hb_004324_310 Hb_001184_090--Hb_002105_090 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050 Hb_000317_030 Hb_000317_030 Hb_000576_010--Hb_000317_030 Hb_004994_170 Hb_004994_170 Hb_000576_010--Hb_004994_170 Hb_004204_070 Hb_004204_070 Hb_000576_010--Hb_004204_070 Hb_004223_130 Hb_004223_130 Hb_000576_010--Hb_004223_130 Hb_010381_070 Hb_010381_070 Hb_000576_010--Hb_010381_070 Hb_000975_290 Hb_000975_290 Hb_000576_010--Hb_000975_290 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_158467_010 Hb_158467_010 Hb_032264_110--Hb_158467_010 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_010655_010 Hb_010655_010 Hb_032264_110--Hb_010655_010 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80113 0.319552 2.61487 1.57146 3.44548 2.75465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82205 3.41891 3.48738 1.20009 0.180851

CAGE analysis