Hb_000427_050

Information

Type -
Description -
Location Contig427: 120039-122108
Sequence    

Annotation

kegg
ID rcu:RCOM_0255040
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002530092.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LRV2
description Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
trembl
ID B9SVS3
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0255040 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g26540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42062: 120909-121158 , PASA_asmbl_42064: 121626-122090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001159_100 0.0731371912 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
3 Hb_002678_020 0.0731606367 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
4 Hb_029584_130 0.0810243726 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
5 Hb_000007_150 0.0829160313 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
6 Hb_001266_060 0.0843238812 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
7 Hb_004452_010 0.0916375107 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
8 Hb_001507_020 0.0926470744 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
9 Hb_001226_020 0.0927821657 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
10 Hb_034585_060 0.0940291259 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
11 Hb_003750_080 0.0963442136 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
12 Hb_019654_190 0.1003386195 - - protein kinase, putative [Ricinus communis]
13 Hb_005914_150 0.103470371 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
14 Hb_001085_170 0.1044345122 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
15 Hb_000776_110 0.1049927578 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
16 Hb_000204_210 0.1062525817 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
17 Hb_006922_030 0.1063858801 - - ubiquitin, putative [Ricinus communis]
18 Hb_002810_020 0.1086368539 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
19 Hb_001975_160 0.1087070333 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000457_150 0.1088144524 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000427_050 Hb_000427_050 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_000427_050--Hb_002678_020 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150 Hb_001266_060 Hb_001266_060 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010 Hb_001159_100--Hb_029584_130 Hb_007951_050 Hb_007951_050 Hb_001159_100--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_002496_030 Hb_002496_030 Hb_001159_100--Hb_002496_030 Hb_000022_250 Hb_000022_250 Hb_001159_100--Hb_000022_250 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_000019_130 Hb_000019_130 Hb_000007_150--Hb_000019_130 Hb_000007_150--Hb_000000_250 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000297_200 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001956_200 Hb_001956_200 Hb_001266_060--Hb_001956_200 Hb_001266_060--Hb_004452_010 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_004452_010--Hb_001956_200 Hb_002636_050 Hb_002636_050 Hb_004452_010--Hb_002636_050 Hb_004452_010--Hb_002678_020 Hb_008500_010 Hb_008500_010 Hb_004452_010--Hb_008500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94155 1.94861 0.700034 0.611205 1.7811 3.529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69454 1.82906 4.67209 1.34611 0.86788

CAGE analysis