Hb_000427_110

Information

Type -
Description -
Location Contig427: 162444-169220
Sequence    

Annotation

kegg
ID tcc:TCM_011318
description X-ray repair cross complementing 2 (XRCC2), putative
nr
ID XP_012076087.1
description PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
swissprot
ID Q682D3
description DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2
trembl
ID A0A067KQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11931 PE=4 SV=1
Gene Ontology
ID GO:0005657
description dna repair protein xrcc2 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42065: 138714-168662 , PASA_asmbl_42067: 168683-169167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_110 0.0 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
2 Hb_002352_010 0.0823946496 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
3 Hb_001473_130 0.0830738628 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
4 Hb_001191_100 0.0889543584 - - F-actin capping protein beta subunit [Populus trichocarpa]
5 Hb_002326_030 0.0949458517 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_001606_070 0.0960490454 - - fimbrin, putative [Ricinus communis]
7 Hb_026988_020 0.0980948861 - - outward rectifying K+ channel [Hevea brasiliensis]
8 Hb_001677_110 0.1009183304 - - Protein YIPF1, putative [Ricinus communis]
9 Hb_002025_320 0.1015895332 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
10 Hb_005000_290 0.1031778906 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
11 Hb_002282_020 0.1049066021 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_000173_170 0.1078890021 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_007229_060 0.1079203047 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
14 Hb_000983_100 0.1080332881 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
15 Hb_006787_040 0.1084272156 - - polyadenylate-binding protein, putative [Ricinus communis]
16 Hb_000861_040 0.1085380761 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
17 Hb_001366_230 0.1096619572 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000956_010 0.1108152836 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
19 Hb_002527_070 0.1110481741 - - axonemal dynein light chain, putative [Ricinus communis]
20 Hb_001427_120 0.1119872157 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]

Gene co-expression network

sample Hb_000427_110 Hb_000427_110 Hb_002352_010 Hb_002352_010 Hb_000427_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_000427_110--Hb_001473_130 Hb_001191_100 Hb_001191_100 Hb_000427_110--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000427_110--Hb_002326_030 Hb_001606_070 Hb_001606_070 Hb_000427_110--Hb_001606_070 Hb_026988_020 Hb_026988_020 Hb_000427_110--Hb_026988_020 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_001473_130--Hb_002326_030 Hb_001473_130--Hb_002527_070 Hb_001366_230 Hb_001366_230 Hb_001191_100--Hb_001366_230 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_002326_030--Hb_012522_030 Hb_002326_030--Hb_000173_170 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_001606_070--Hb_005779_100 Hb_003030_080 Hb_003030_080 Hb_001606_070--Hb_003030_080 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_001606_070--Hb_000861_040 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_026988_020--Hb_001366_230 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_026988_020--Hb_001677_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2606 1.88191 3.59455 6.46978 22.0088 34.7298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2209 34.9735 45.3491 5.12441 0.603692

CAGE analysis