Hb_000428_040

Information

Type -
Description -
Location Contig428: 77120-79108
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38580g
description POPTRDRAFT_829908; hypothetical protein
nr
ID XP_011006720.1
description PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
swissprot
ID Q1PFD9
description Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1
trembl
ID B9GGV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38580g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42072: 77156-77668 , PASA_asmbl_42073: 77175-77664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000428_040 0.0 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
2 Hb_004657_070 0.0985253139 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
3 Hb_116701_010 0.1062510811 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
4 Hb_000236_230 0.1073923353 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
5 Hb_000130_350 0.1205333683 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_008762_010 0.1289722634 - - dopamine beta-monooxygenase, putative [Ricinus communis]
7 Hb_000173_140 0.1299013326 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
8 Hb_024074_030 0.1492800226 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
9 Hb_000622_190 0.1517105463 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
10 Hb_000173_240 0.1528021469 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000413_030 0.1551928181 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
12 Hb_158092_050 0.1553672985 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
13 Hb_064047_020 0.1554904284 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
14 Hb_000608_090 0.1560886951 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005056_040 0.1565638093 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
16 Hb_005183_130 0.156683258 - - glycogenin, putative [Ricinus communis]
17 Hb_004586_440 0.1569938078 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_001758_090 0.1570289124 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
19 Hb_011912_010 0.1576607285 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_001214_040 0.158487287 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000428_040 Hb_000428_040 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_116701_010 Hb_116701_010 Hb_000428_040--Hb_116701_010 Hb_000236_230 Hb_000236_230 Hb_000428_040--Hb_000236_230 Hb_000130_350 Hb_000130_350 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_000482_080 Hb_000482_080 Hb_004657_070--Hb_000482_080 Hb_000193_130 Hb_000193_130 Hb_004657_070--Hb_000193_130 Hb_000608_090 Hb_000608_090 Hb_004657_070--Hb_000608_090 Hb_031330_010 Hb_031330_010 Hb_004657_070--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_004657_070--Hb_004586_440 Hb_116701_010--Hb_000130_350 Hb_158092_050 Hb_158092_050 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_008762_010 Hb_000173_240 Hb_000173_240 Hb_116701_010--Hb_000173_240 Hb_001366_110 Hb_001366_110 Hb_116701_010--Hb_001366_110 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_000130_350--Hb_158092_050 Hb_031284_060 Hb_031284_060 Hb_000130_350--Hb_031284_060 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_008762_010 Hb_008762_010--Hb_031284_060 Hb_001189_080 Hb_001189_080 Hb_008762_010--Hb_001189_080 Hb_008762_010--Hb_158092_050 Hb_005523_030 Hb_005523_030 Hb_008762_010--Hb_005523_030 Hb_001500_090 Hb_001500_090 Hb_000173_140--Hb_001500_090 Hb_001080_240 Hb_001080_240 Hb_000173_140--Hb_001080_240 Hb_005056_040 Hb_005056_040 Hb_000173_140--Hb_005056_040 Hb_000173_140--Hb_000173_240 Hb_001477_050 Hb_001477_050 Hb_000173_140--Hb_001477_050 Hb_000193_320 Hb_000193_320 Hb_000173_140--Hb_000193_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666033 0.341065 0.660694 19.1138 0.136386 0.174478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.393676 0.534926 0.210559 0.270181 8.78831

CAGE analysis