Hb_000429_030

Information

Type -
Description -
Location Contig429: 9192-11117
Sequence    

Annotation

kegg
ID rcu:RCOM_0091750
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002526749.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9FL51
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1
trembl
ID B9SL80
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0091750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probably inactive leucine-rich repeat receptor-like protein kinase at5g06940

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42084: 9353-10779 , PASA_asmbl_42085: 10812-10993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_030 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_003371_040 0.0947154534 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
3 Hb_003171_070 0.1005246506 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
4 Hb_081191_010 0.1096020601 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
5 Hb_170861_010 0.1127916803 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_007161_020 0.1140070476 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
7 Hb_009615_030 0.1224196328 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000106_060 0.1315085014 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
9 Hb_006314_020 0.131842996 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
10 Hb_000098_210 0.1319725675 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
11 Hb_002580_020 0.1326209911 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
12 Hb_000297_220 0.134259998 - - SAUR family protein [Theobroma cacao]
13 Hb_002876_190 0.1364343374 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
14 Hb_113945_010 0.137856014 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_000749_160 0.137971591 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_001775_130 0.1396141396 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_000417_350 0.1401446066 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004875_040 0.1415406809 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
19 Hb_080068_010 0.1418741184 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
20 Hb_039096_010 0.1421871388 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000429_030 Hb_000429_030 Hb_003371_040 Hb_003371_040 Hb_000429_030--Hb_003371_040 Hb_003171_070 Hb_003171_070 Hb_000429_030--Hb_003171_070 Hb_081191_010 Hb_081191_010 Hb_000429_030--Hb_081191_010 Hb_170861_010 Hb_170861_010 Hb_000429_030--Hb_170861_010 Hb_007161_020 Hb_007161_020 Hb_000429_030--Hb_007161_020 Hb_009615_030 Hb_009615_030 Hb_000429_030--Hb_009615_030 Hb_006314_020 Hb_006314_020 Hb_003371_040--Hb_006314_020 Hb_002876_190 Hb_002876_190 Hb_003371_040--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_003371_040--Hb_001775_130 Hb_003371_040--Hb_003171_070 Hb_001856_150 Hb_001856_150 Hb_003371_040--Hb_001856_150 Hb_000676_380 Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_003171_070--Hb_006314_020 Hb_003171_070--Hb_001856_150 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_002580_020 Hb_002580_020 Hb_081191_010--Hb_002580_020 Hb_003811_050 Hb_003811_050 Hb_081191_010--Hb_003811_050 Hb_081191_010--Hb_009615_030 Hb_003177_100 Hb_003177_100 Hb_081191_010--Hb_003177_100 Hb_002413_030 Hb_002413_030 Hb_081191_010--Hb_002413_030 Hb_000106_060 Hb_000106_060 Hb_170861_010--Hb_000106_060 Hb_113945_010 Hb_113945_010 Hb_170861_010--Hb_113945_010 Hb_000934_180 Hb_000934_180 Hb_170861_010--Hb_000934_180 Hb_039096_010 Hb_039096_010 Hb_170861_010--Hb_039096_010 Hb_120357_010 Hb_120357_010 Hb_170861_010--Hb_120357_010 Hb_170861_010--Hb_002876_190 Hb_007161_020--Hb_113945_010 Hb_007161_020--Hb_170861_010 Hb_007161_020--Hb_000106_060 Hb_007161_020--Hb_039096_010 Hb_080068_010 Hb_080068_010 Hb_007161_020--Hb_080068_010 Hb_009615_030--Hb_002580_020 Hb_009615_030--Hb_003177_100 Hb_000749_160 Hb_000749_160 Hb_009615_030--Hb_000749_160 Hb_002097_180 Hb_002097_180 Hb_009615_030--Hb_002097_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0670941 1.96401 1.54773 14.9171 0.0200598 0.0371875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.86572 0.625427

CAGE analysis