Hb_000429_040

Information

Type -
Description -
Location Contig429: 28365-36790
Sequence    

Annotation

kegg
ID vvi:100265910
description chaperone protein dnaJ 6
nr
ID XP_002283060.1
description PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
swissprot
ID Q9FL54
description Chaperone protein dnaJ 6 OS=Arabidopsis thaliana GN=ATJ6 PE=2 SV=1
trembl
ID D7TI11
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07960 PE=4 SV=1
Gene Ontology
ID GO:0004672
description chaperone protein dnaj 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42086: 34793-36718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_040 0.0 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
2 Hb_000832_190 0.0841192198 - - Rab3 [Hevea brasiliensis]
3 Hb_004041_020 0.085380344 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
4 Hb_001377_450 0.089880216 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
5 Hb_000413_240 0.0914825758 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
6 Hb_000163_100 0.0916809765 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
7 Hb_004984_030 0.0927224717 - - protein with unknown function [Ricinus communis]
8 Hb_000599_260 0.1047721736 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
9 Hb_001073_080 0.1048987995 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
10 Hb_000946_090 0.1066887042 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
11 Hb_002946_190 0.1071171419 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
12 Hb_000676_390 0.1078782973 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
13 Hb_002968_040 0.1081445974 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
14 Hb_002540_080 0.1087466482 - - cysteine-type peptidase, putative [Ricinus communis]
15 Hb_001931_010 0.1095660589 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
16 Hb_006326_040 0.110373151 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015299_030 0.1120104344 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_000012_250 0.1128337164 - - hypothetical protein L484_019524 [Morus notabilis]
19 Hb_001234_070 0.1130970321 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
20 Hb_000359_150 0.1132172133 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000429_040 Hb_000429_040 Hb_000832_190 Hb_000832_190 Hb_000429_040--Hb_000832_190 Hb_004041_020 Hb_004041_020 Hb_000429_040--Hb_004041_020 Hb_001377_450 Hb_001377_450 Hb_000429_040--Hb_001377_450 Hb_000413_240 Hb_000413_240 Hb_000429_040--Hb_000413_240 Hb_000163_100 Hb_000163_100 Hb_000429_040--Hb_000163_100 Hb_004984_030 Hb_004984_030 Hb_000429_040--Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000832_190--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_001073_080 Hb_001073_080 Hb_001377_450--Hb_001073_080 Hb_000413_240--Hb_000163_100 Hb_000413_240--Hb_001863_380 Hb_000390_090 Hb_000390_090 Hb_000413_240--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_000413_240--Hb_000413_060 Hb_000413_240--Hb_002946_190 Hb_000163_100--Hb_000413_060 Hb_000163_100--Hb_001863_380 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.608 5.34172 30.9575 19.646 4.3079 10.3255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0853 30.6173 13.6052 11.9786 14.9554

CAGE analysis