Hb_000429_050

Information

Type -
Description -
Location Contig429: 38287-43696
Sequence    

Annotation

kegg
ID rcu:RCOM_0091430
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_012073015.1
description PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
swissprot
ID Q9LT35
description Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=3 SV=1
trembl
ID A0A067KZS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06808 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase nek6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42087: 38301-43638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_050 0.0 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
2 Hb_000359_090 0.0776418136 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
3 Hb_012651_010 0.0959168159 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
4 Hb_000028_600 0.106491415 - - glutaredoxin-1, grx1, putative [Ricinus communis]
5 Hb_002781_030 0.1077280707 - - protein binding protein, putative [Ricinus communis]
6 Hb_001014_210 0.1098956908 - - CYP51 [Hevea brasiliensis]
7 Hb_000258_240 0.1143789346 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
8 Hb_030827_070 0.1145740893 - - PREDICTED: transmembrane protein 161B [Jatropha curcas]
9 Hb_032969_020 0.114992152 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000331_370 0.1181157607 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
11 Hb_004480_020 0.1212634894 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
12 Hb_000984_310 0.1220781967 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
13 Hb_001481_150 0.1234663831 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
14 Hb_001842_010 0.1263972968 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_005797_010 0.1267421363 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
16 Hb_000140_350 0.127895902 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000836_280 0.1283417228 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
18 Hb_013057_020 0.1292696705 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
19 Hb_007286_020 0.129536323 - - hypothetical protein L484_010675 [Morus notabilis]
20 Hb_000890_230 0.1304015014 - - hypothetical protein JCGZ_02013 [Jatropha curcas]

Gene co-expression network

sample Hb_000429_050 Hb_000429_050 Hb_000359_090 Hb_000359_090 Hb_000429_050--Hb_000359_090 Hb_012651_010 Hb_012651_010 Hb_000429_050--Hb_012651_010 Hb_000028_600 Hb_000028_600 Hb_000429_050--Hb_000028_600 Hb_002781_030 Hb_002781_030 Hb_000429_050--Hb_002781_030 Hb_001014_210 Hb_001014_210 Hb_000429_050--Hb_001014_210 Hb_000258_240 Hb_000258_240 Hb_000429_050--Hb_000258_240 Hb_000359_090--Hb_000258_240 Hb_000359_090--Hb_002781_030 Hb_000384_070 Hb_000384_070 Hb_000359_090--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_000359_090--Hb_002133_020 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_000002_480 Hb_000002_480 Hb_012651_010--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_012651_010--Hb_000890_230 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_003988_050 Hb_003988_050 Hb_000028_600--Hb_003988_050 Hb_000331_370 Hb_000331_370 Hb_000028_600--Hb_000331_370 Hb_000115_150 Hb_000115_150 Hb_000028_600--Hb_000115_150 Hb_002490_010 Hb_002490_010 Hb_000028_600--Hb_002490_010 Hb_002150_040 Hb_002150_040 Hb_000028_600--Hb_002150_040 Hb_002781_030--Hb_000258_240 Hb_000928_190 Hb_000928_190 Hb_002781_030--Hb_000928_190 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_001258_110 Hb_001258_110 Hb_001014_210--Hb_001258_110 Hb_000130_180 Hb_000130_180 Hb_001014_210--Hb_000130_180 Hb_003683_020 Hb_003683_020 Hb_001014_210--Hb_003683_020 Hb_009569_040 Hb_009569_040 Hb_001014_210--Hb_009569_040 Hb_000208_280 Hb_000208_280 Hb_001014_210--Hb_000208_280 Hb_007481_010 Hb_007481_010 Hb_001014_210--Hb_007481_010 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.3417 41.2532 20.4853 129.974 31.5808 39.5045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.2965 30.7538 32.8271 45.71 34.7687

CAGE analysis