Hb_000429_120

Information

Type -
Description -
Location Contig429: 154821-183286
Sequence    

Annotation

kegg
ID rcu:RCOM_0090500
description DNA-directed RNA polymerase I largest subunit, putative
nr
ID XP_012073009.1
description PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
swissprot
ID P15398
description DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
trembl
ID B9SL65
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0090500 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42097: 154822-156900 , PASA_asmbl_42098: 157107-165739 , PASA_asmbl_42099: 167141-168928 , PASA_asmbl_42100: 168963-169929 , PASA_asmbl_42101: 174027-178676 , PASA_asmbl_42102: 178734-179156 , PASA_asmbl_42103: 179199-183257 , PASA_asmbl_42104: 183051-183206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_120 0.0 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
2 Hb_001866_110 0.0675511175 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
3 Hb_002027_270 0.0693465618 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
4 Hb_004619_050 0.072212332 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
5 Hb_000046_440 0.0746881616 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
6 Hb_016898_010 0.078475094 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_028487_110 0.0797890296 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
8 Hb_012490_030 0.0802612347 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
9 Hb_000567_050 0.0806901215 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
10 Hb_003428_070 0.0819684497 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
11 Hb_001663_030 0.0848475835 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
12 Hb_000316_030 0.0855992118 - - zinc finger protein, putative [Ricinus communis]
13 Hb_005977_090 0.0869081457 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
14 Hb_003052_150 0.0872576589 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
15 Hb_032458_010 0.0880755536 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
16 Hb_002067_150 0.0885267973 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
17 Hb_002784_060 0.0885901956 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
18 Hb_006114_030 0.0892659835 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
19 Hb_004108_140 0.0894581983 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
20 Hb_003994_240 0.0896743093 - - Mediator subunit 8 isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_000429_120 Hb_000429_120 Hb_001866_110 Hb_001866_110 Hb_000429_120--Hb_001866_110 Hb_002027_270 Hb_002027_270 Hb_000429_120--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_000429_120--Hb_004619_050 Hb_000046_440 Hb_000046_440 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_000889_020 Hb_000889_020 Hb_001866_110--Hb_000889_020 Hb_025012_010 Hb_025012_010 Hb_002027_270--Hb_025012_010 Hb_002027_270--Hb_004619_050 Hb_000567_050 Hb_000567_050 Hb_002027_270--Hb_000567_050 Hb_000031_220 Hb_000031_220 Hb_002027_270--Hb_000031_220 Hb_000600_070 Hb_000600_070 Hb_002027_270--Hb_000600_070 Hb_032458_010 Hb_032458_010 Hb_004619_050--Hb_032458_010 Hb_004447_060 Hb_004447_060 Hb_004619_050--Hb_004447_060 Hb_004619_050--Hb_025012_010 Hb_004619_050--Hb_003428_070 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000789_080 Hb_000789_080 Hb_000046_440--Hb_000789_080 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000046_440--Hb_000567_050 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_028487_110--Hb_005977_090 Hb_001638_250 Hb_001638_250 Hb_028487_110--Hb_001638_250 Hb_009535_020 Hb_009535_020 Hb_028487_110--Hb_009535_020 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_028487_110--Hb_000743_040 Hb_028487_110--Hb_000046_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7902 10.41 3.59928 6.71702 17.0749 27.7569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3257 9.81179 11.273 14.357 11.4528

CAGE analysis