Hb_000429_150

Information

Type -
Description -
Location Contig429: 195138-206832
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05340g
description POPTRDRAFT_1103181; hypothetical protein
nr
ID KDP37345.1
description hypothetical protein JCGZ_06799 [Jatropha curcas]
swissprot
ID Q8LG50
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=2
trembl
ID A0A067KYK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06799 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42105: 195201-206782 , PASA_asmbl_42106: 197893-198224 , PASA_asmbl_42109: 201497-201854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_150 0.0 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
2 Hb_007638_030 0.0573282064 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
3 Hb_000140_280 0.0621946187 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
4 Hb_002414_050 0.0736618372 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
5 Hb_004567_090 0.0739205442 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
6 Hb_002414_060 0.0740487316 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
7 Hb_001571_050 0.0777916135 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
8 Hb_000111_320 0.0798495895 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
9 Hb_012322_010 0.0806900993 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_002289_080 0.0810390088 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
11 Hb_002965_090 0.0824240092 - - importin alpha, putative [Ricinus communis]
12 Hb_000159_090 0.0839137662 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
13 Hb_007558_100 0.0842120848 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
14 Hb_000830_030 0.0843929056 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
15 Hb_000110_190 0.0853381297 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
16 Hb_003544_160 0.0859183273 - - -
17 Hb_010964_040 0.0871699024 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
18 Hb_001662_100 0.0878653981 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
19 Hb_011674_020 0.0888064075 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
20 Hb_000069_210 0.0894528188 - - PREDICTED: exportin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000429_150 Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_000429_150--Hb_007638_030 Hb_000140_280 Hb_000140_280 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_000159_090 Hb_000159_090 Hb_007638_030--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_007638_030--Hb_010964_040 Hb_007638_030--Hb_000140_280 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_000140_280--Hb_000159_090 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030 Hb_001662_100 Hb_001662_100 Hb_002414_050--Hb_001662_100 Hb_003544_160 Hb_003544_160 Hb_002414_050--Hb_003544_160 Hb_000022_020 Hb_000022_020 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_004452_110 Hb_004452_110 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_143629_130 Hb_143629_130 Hb_002414_060--Hb_143629_130 Hb_007558_100 Hb_007558_100 Hb_002414_060--Hb_007558_100 Hb_004317_060 Hb_004317_060 Hb_002414_060--Hb_004317_060 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_002414_060--Hb_000140_280 Hb_002965_090 Hb_002965_090 Hb_001571_050--Hb_002965_090 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_004109_310 Hb_004109_310 Hb_001571_050--Hb_004109_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.19546 9.66782 7.58925 19.9116 10.0626 21.1641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0467 12.8218 11.8738 18.1145 17.1502

CAGE analysis