Hb_000429_170

Information

Type -
Description -
Location Contig429: 253648-263507
Sequence    

Annotation

kegg
ID rcu:RCOM_0089930
description adenylosuccinate synthetase, putative (EC:6.3.4.4)
nr
ID XP_012086097.1
description PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
swissprot
ID B9SL58
description Adenylosuccinate synthetase 2, chloroplastic OS=Ricinus communis GN=PURA2 PE=3 SV=1
trembl
ID A0A067JT58
description Adenylosuccinate synthetase, chloroplastic OS=Jatropha curcas GN=PURA PE=3 SV=1
Gene Ontology
ID GO:0005829
description adenylosuccinate synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42115: 259970-263380 , PASA_asmbl_42116: 254687-263425 , PASA_asmbl_42117: 254698-263380
cDNA
(Sanger)
(ID:Location)		 037_M12.ab1: 259979-261114

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_170 0.0 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
2 Hb_002253_070 0.0823169046 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
3 Hb_007924_020 0.082899225 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_034299_060 0.0829834794 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
5 Hb_000622_040 0.0877250871 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
6 Hb_003151_050 0.0884723263 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
7 Hb_000834_270 0.0892266191 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
8 Hb_011224_110 0.0961133401 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
9 Hb_005000_070 0.0964221406 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
10 Hb_002216_040 0.0964444208 - - PREDICTED: protein PRD1 [Jatropha curcas]
11 Hb_000111_360 0.0969043154 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003018_200 0.0990755489 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
13 Hb_005539_360 0.1003185766 - - kinesin light chain, putative [Ricinus communis]
14 Hb_026527_030 0.1011111669 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
15 Hb_001863_390 0.1015349073 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
16 Hb_055062_030 0.1015528911 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
17 Hb_054127_040 0.1025734346 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
18 Hb_001277_330 0.102905685 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
19 Hb_004951_040 0.1030199255 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
20 Hb_004657_050 0.1041088509 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]

Gene co-expression network

sample Hb_000429_170 Hb_000429_170 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_034299_060 Hb_034299_060 Hb_000429_170--Hb_034299_060 Hb_000622_040 Hb_000622_040 Hb_000429_170--Hb_000622_040 Hb_003151_050 Hb_003151_050 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_003032_040 Hb_003032_040 Hb_002253_070--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_002253_070--Hb_026527_030 Hb_005062_070 Hb_005062_070 Hb_002253_070--Hb_005062_070 Hb_001604_010 Hb_001604_010 Hb_002253_070--Hb_001604_010 Hb_001454_210 Hb_001454_210 Hb_002253_070--Hb_001454_210 Hb_007924_020--Hb_000622_040 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120 Hb_054127_040 Hb_054127_040 Hb_034299_060--Hb_054127_040 Hb_034299_060--Hb_003151_050 Hb_006824_020 Hb_006824_020 Hb_034299_060--Hb_006824_020 Hb_034299_060--Hb_000622_040 Hb_005357_150 Hb_005357_150 Hb_034299_060--Hb_005357_150 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_005000_070 Hb_005000_070 Hb_000622_040--Hb_005000_070 Hb_000091_090 Hb_000091_090 Hb_003151_050--Hb_000091_090 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.5772 20.5873 14.3399 8.90482 44.5459 28.1612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.4378 60.9547 67.5048 27.1167 17.8932

CAGE analysis