Hb_000429_200

Information

Type -
Description -
Location Contig429: 269570-290438
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05330g
description POPTRDRAFT_560544; DNA-binding family protein
nr
ID XP_012086102.1
description PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
swissprot
ID Q60560
description DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1
trembl
ID A0A067JQ48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21045 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein smubp-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42121: 278456-278635 , PASA_asmbl_42122: 287583-289760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_200 0.0 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
2 Hb_000522_090 0.0785751813 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
3 Hb_007044_080 0.0800471455 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
4 Hb_000358_250 0.08229068 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
5 Hb_000116_180 0.0884128597 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
6 Hb_000803_300 0.0904077748 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_000179_020 0.092371045 - - amidase, putative [Ricinus communis]
8 Hb_008406_110 0.0930684586 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
9 Hb_001866_110 0.0932748255 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
10 Hb_000029_130 0.0938339515 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
11 Hb_007380_080 0.0941779873 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
12 Hb_000059_150 0.0947367219 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
13 Hb_012490_030 0.0950476261 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
14 Hb_026099_010 0.0951154735 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
15 Hb_028487_110 0.0951167242 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
16 Hb_002174_060 0.0974507136 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
17 Hb_003506_080 0.0974546615 - - dipeptidyl peptidase IV, putative [Ricinus communis]
18 Hb_002272_180 0.0975535637 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
19 Hb_001124_120 0.0982464741 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
20 Hb_001300_070 0.0983040092 - - OTU domain-containing protein 6B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000429_200 Hb_000429_200 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000358_250 Hb_000358_250 Hb_000429_200--Hb_000358_250 Hb_000116_180 Hb_000116_180 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020 Hb_000522_090--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_000522_090--Hb_002097_090 Hb_005245_130 Hb_005245_130 Hb_000522_090--Hb_005245_130 Hb_004934_090 Hb_004934_090 Hb_000522_090--Hb_004934_090 Hb_005977_090 Hb_005977_090 Hb_000522_090--Hb_005977_090 Hb_002030_030 Hb_002030_030 Hb_000522_090--Hb_002030_030 Hb_000933_090 Hb_000933_090 Hb_007044_080--Hb_000933_090 Hb_004117_130 Hb_004117_130 Hb_007044_080--Hb_004117_130 Hb_000023_220 Hb_000023_220 Hb_007044_080--Hb_000023_220 Hb_028390_010 Hb_028390_010 Hb_007044_080--Hb_028390_010 Hb_001199_020 Hb_001199_020 Hb_007044_080--Hb_001199_020 Hb_002477_130 Hb_002477_130 Hb_000358_250--Hb_002477_130 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_003849_250 Hb_003849_250 Hb_000358_250--Hb_003849_250 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_002174_060 Hb_002174_060 Hb_000179_020--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7568 8.47035 7.45937 6.46169 31.8518 25.4589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5663 12.803 10.2467 13.4033 10.8122

CAGE analysis