Hb_000429_220

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig429: 295399-299942
Sequence    

Annotation

kegg
ID rcu:RCOM_0089480
description hypothetical protein
nr
ID XP_012080641.1
description PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SL53
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0089480 PE=4 SV=1
Gene Ontology
ID GO:0005488
description ring fyve phd zinc finger superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42126: 295455-296153 , PASA_asmbl_42127: 297375-298413 , PASA_asmbl_42128: 299417-300118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_220 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
2 Hb_004453_110 0.0380684088 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
3 Hb_009175_020 0.0599868804 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
4 Hb_089140_050 0.0606591097 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
5 Hb_009503_030 0.0681604489 - - protein dimerization, putative [Ricinus communis]
6 Hb_027380_140 0.0694107747 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
7 Hb_002823_030 0.0702489931 - - -
8 Hb_002329_040 0.0707418388 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
9 Hb_001195_320 0.0709112276 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
10 Hb_000190_120 0.0709806564 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
11 Hb_003371_110 0.0720393131 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
12 Hb_014361_070 0.0731228843 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
13 Hb_000671_070 0.0731904783 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
14 Hb_006882_020 0.0737957078 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003018_130 0.0739618115 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
16 Hb_034432_030 0.074419376 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
17 Hb_005731_090 0.0749095675 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
18 Hb_001623_480 0.0751718949 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
19 Hb_002174_020 0.0755900647 - - ring finger protein, putative [Ricinus communis]
20 Hb_000544_010 0.0765024829 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000429_220 Hb_000429_220 Hb_004453_110 Hb_004453_110 Hb_000429_220--Hb_004453_110 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_089140_050 Hb_089140_050 Hb_000429_220--Hb_089140_050 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_002823_030 Hb_002823_030 Hb_000429_220--Hb_002823_030 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_009486_180 Hb_009486_180 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_000671_070 Hb_000671_070 Hb_089140_050--Hb_000671_070 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_027380_140--Hb_000574_440 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27438 5.30278 3.24553 4.38729 8.36685 6.9623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38843 3.37293 3.40056 4.4201 5.88379

CAGE analysis