Hb_000430_020

Information

Type -
Description -
Location Contig430: 49527-50475
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42164: 49664-50776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000430_020 0.0 - - -
2 Hb_005074_030 0.0647655263 - - -
3 Hb_000538_230 0.0759291265 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
4 Hb_015807_150 0.0819834479 - - actin binding protein, putative [Ricinus communis]
5 Hb_000890_150 0.0837819307 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
6 Hb_001159_110 0.0867595974 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
7 Hb_000178_130 0.0891408274 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
8 Hb_000710_060 0.090583743 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
9 Hb_000329_110 0.0915389388 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
10 Hb_001123_060 0.0951664077 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
11 Hb_001377_260 0.096277536 - - protein with unknown function [Ricinus communis]
12 Hb_000215_320 0.0985529021 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_004994_140 0.1035348155 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
14 Hb_000614_250 0.103549991 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
15 Hb_000185_030 0.1037253478 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
16 Hb_000417_040 0.1060207953 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
17 Hb_000359_060 0.1070579219 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
18 Hb_000173_470 0.1070927974 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
19 Hb_008770_030 0.1073529243 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
20 Hb_001205_240 0.1084222521 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]

Gene co-expression network

sample Hb_000430_020 Hb_000430_020 Hb_005074_030 Hb_005074_030 Hb_000430_020--Hb_005074_030 Hb_000538_230 Hb_000538_230 Hb_000430_020--Hb_000538_230 Hb_015807_150 Hb_015807_150 Hb_000430_020--Hb_015807_150 Hb_000890_150 Hb_000890_150 Hb_000430_020--Hb_000890_150 Hb_001159_110 Hb_001159_110 Hb_000430_020--Hb_001159_110 Hb_000178_130 Hb_000178_130 Hb_000430_020--Hb_000178_130 Hb_005074_030--Hb_001159_110 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_005074_030--Hb_000538_230 Hb_000649_130 Hb_000649_130 Hb_005074_030--Hb_000649_130 Hb_000749_050 Hb_000749_050 Hb_005074_030--Hb_000749_050 Hb_000215_320 Hb_000215_320 Hb_000538_230--Hb_000215_320 Hb_000538_230--Hb_001159_110 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_019863_070 Hb_019863_070 Hb_015807_150--Hb_019863_070 Hb_008770_030 Hb_008770_030 Hb_015807_150--Hb_008770_030 Hb_002818_030 Hb_002818_030 Hb_015807_150--Hb_002818_030 Hb_015934_040 Hb_015934_040 Hb_015807_150--Hb_015934_040 Hb_000032_520 Hb_000032_520 Hb_015807_150--Hb_000032_520 Hb_000297_010 Hb_000297_010 Hb_015807_150--Hb_000297_010 Hb_000359_060 Hb_000359_060 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_000230_390 Hb_000230_390 Hb_001159_110--Hb_000230_390 Hb_000614_250 Hb_000614_250 Hb_001159_110--Hb_000614_250 Hb_004453_050 Hb_004453_050 Hb_001159_110--Hb_004453_050 Hb_007508_090 Hb_007508_090 Hb_001159_110--Hb_007508_090 Hb_005306_190 Hb_005306_190 Hb_000178_130--Hb_005306_190 Hb_004994_140 Hb_004994_140 Hb_000178_130--Hb_004994_140 Hb_000417_040 Hb_000417_040 Hb_000178_130--Hb_000417_040 Hb_003389_040 Hb_003389_040 Hb_000178_130--Hb_003389_040 Hb_000178_130--Hb_001123_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03362 7.60952 2.60959 7.72025 3.81149 3.3391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74508 7.8268 7.40907 4.58906 2.63627

CAGE analysis