Hb_000431_020

Information

Type -
Description -
Location Contig431: 42488-49925
Sequence    

Annotation

kegg
ID rcu:RCOM_0090500
description DNA-directed RNA polymerase I largest subunit, putative
nr
ID KDP37347.1
description hypothetical protein JCGZ_06801 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMK3
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_06801 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42212: 43729-45120 , PASA_asmbl_42213: 45199-46812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_020 0.0 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
2 Hb_000176_170 0.1810645328 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
3 Hb_003768_040 0.1884274822 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000832_200 0.1926787972 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
5 Hb_000038_030 0.1983330709 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
6 Hb_099864_010 0.2045634003 - - Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_000406_040 0.2059749053 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
8 Hb_000106_040 0.2080966236 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
9 Hb_000857_050 0.2087768665 - - PREDICTED: protein YLS9 [Jatropha curcas]
10 Hb_000497_140 0.2145891124 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
11 Hb_010620_010 0.2155540764 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
12 Hb_006960_020 0.2187594659 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
13 Hb_127003_010 0.2202947246 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
14 Hb_011218_060 0.2208660066 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
15 Hb_182424_010 0.224658284 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
16 Hb_000291_280 0.2251943707 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
17 Hb_000187_090 0.2258748393 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
18 Hb_011457_110 0.2266771237 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
19 Hb_000101_160 0.2268243801 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
20 Hb_000041_150 0.2276099941 - - Stachyose synthase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000431_020 Hb_000431_020 Hb_000176_170 Hb_000176_170 Hb_000431_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_000431_020--Hb_003768_040 Hb_000832_200 Hb_000832_200 Hb_000431_020--Hb_000832_200 Hb_000038_030 Hb_000038_030 Hb_000431_020--Hb_000038_030 Hb_099864_010 Hb_099864_010 Hb_000431_020--Hb_099864_010 Hb_000406_040 Hb_000406_040 Hb_000431_020--Hb_000406_040 Hb_004102_130 Hb_004102_130 Hb_000176_170--Hb_004102_130 Hb_098315_110 Hb_098315_110 Hb_000176_170--Hb_098315_110 Hb_000208_290 Hb_000208_290 Hb_000176_170--Hb_000208_290 Hb_011457_110 Hb_011457_110 Hb_000176_170--Hb_011457_110 Hb_000300_530 Hb_000300_530 Hb_000176_170--Hb_000300_530 Hb_006029_010 Hb_006029_010 Hb_000176_170--Hb_006029_010 Hb_000099_220 Hb_000099_220 Hb_003768_040--Hb_000099_220 Hb_003768_040--Hb_098315_110 Hb_002311_250 Hb_002311_250 Hb_003768_040--Hb_002311_250 Hb_001946_360 Hb_001946_360 Hb_003768_040--Hb_001946_360 Hb_130177_010 Hb_130177_010 Hb_003768_040--Hb_130177_010 Hb_000832_200--Hb_000406_040 Hb_007441_070 Hb_007441_070 Hb_000832_200--Hb_007441_070 Hb_000832_200--Hb_098315_110 Hb_000329_390 Hb_000329_390 Hb_000832_200--Hb_000329_390 Hb_000832_200--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_000832_200--Hb_002997_100 Hb_002233_090 Hb_002233_090 Hb_000038_030--Hb_002233_090 Hb_011218_060 Hb_011218_060 Hb_000038_030--Hb_011218_060 Hb_000291_280 Hb_000291_280 Hb_000038_030--Hb_000291_280 Hb_001102_110 Hb_001102_110 Hb_000038_030--Hb_001102_110 Hb_000331_150 Hb_000331_150 Hb_000038_030--Hb_000331_150 Hb_182424_010 Hb_182424_010 Hb_099864_010--Hb_182424_010 Hb_038011_010 Hb_038011_010 Hb_099864_010--Hb_038011_010 Hb_099864_010--Hb_011218_060 Hb_127003_010 Hb_127003_010 Hb_099864_010--Hb_127003_010 Hb_011287_090 Hb_011287_090 Hb_099864_010--Hb_011287_090 Hb_001083_030 Hb_001083_030 Hb_000406_040--Hb_001083_030 Hb_012132_030 Hb_012132_030 Hb_000406_040--Hb_012132_030 Hb_165350_010 Hb_165350_010 Hb_000406_040--Hb_165350_010 Hb_000487_100 Hb_000487_100 Hb_000406_040--Hb_000487_100 Hb_017168_010 Hb_017168_010 Hb_000406_040--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_000406_040--Hb_003097_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37402 1.29367 0.487717 0.325711 5.84034 2.63079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167923 0.308141 4.83476 0.638592 0.17903

CAGE analysis