Hb_000431_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig431: 70112-72729
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05310g
description POPTRDRAFT_777162; zinc finger family protein
nr
ID XP_002323306.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q9SVY1
description Zinc finger protein WIP2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1
trembl
ID B9II50
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s05310g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein transparent testa 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_030 0.0 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
2 Hb_002248_090 0.1223443695 - - metallothionein 3-like protein [Hevea brasiliensis]
3 Hb_003371_260 0.1274693434 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
4 Hb_002239_030 0.1329994441 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
5 Hb_024857_010 0.1341822771 - - glutaredoxin 2.1 [Hevea brasiliensis]
6 Hb_000101_140 0.1530200699 - - amino acid transporter, putative [Ricinus communis]
7 Hb_012760_060 0.1568409914 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
8 Hb_087468_010 0.1573162603 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
9 Hb_000723_060 0.1587913268 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
10 Hb_005147_020 0.1610531791 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
11 Hb_024357_010 0.1629976743 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
12 Hb_001529_020 0.1634899774 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_133508_010 0.1650186554 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
14 Hb_001131_100 0.166244047 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
15 Hb_183539_010 0.1697697369 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
16 Hb_008554_010 0.1707866963 - - -
17 Hb_011218_050 0.1715350686 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_017434_020 0.1716417881 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
19 Hb_003371_210 0.1720478239 - - unnamed protein product [Vitis vinifera]
20 Hb_052113_020 0.1734343732 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_000431_030 Hb_000431_030 Hb_002248_090 Hb_002248_090 Hb_000431_030--Hb_002248_090 Hb_003371_260 Hb_003371_260 Hb_000431_030--Hb_003371_260 Hb_002239_030 Hb_002239_030 Hb_000431_030--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_000431_030--Hb_024857_010 Hb_000101_140 Hb_000101_140 Hb_000431_030--Hb_000101_140 Hb_012760_060 Hb_012760_060 Hb_000431_030--Hb_012760_060 Hb_002248_090--Hb_002239_030 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_001073_060 Hb_001073_060 Hb_002248_090--Hb_001073_060 Hb_003371_210 Hb_003371_210 Hb_003371_260--Hb_003371_210 Hb_066320_010 Hb_066320_010 Hb_003371_260--Hb_066320_010 Hb_003371_260--Hb_002239_030 Hb_010381_110 Hb_010381_110 Hb_003371_260--Hb_010381_110 Hb_014361_130 Hb_014361_130 Hb_003371_260--Hb_014361_130 Hb_002239_030--Hb_000101_140 Hb_000723_060 Hb_000723_060 Hb_002239_030--Hb_000723_060 Hb_002239_030--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_002236_020 Hb_002236_020 Hb_024857_010--Hb_002236_020 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_024857_010--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_024857_010--Hb_000252_190 Hb_024857_010--Hb_000101_140 Hb_000101_140--Hb_000656_370 Hb_000101_140--Hb_000723_060 Hb_002968_010 Hb_002968_010 Hb_000101_140--Hb_002968_010 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000101_140--Hb_000521_210 Hb_000506_130 Hb_000506_130 Hb_012760_060--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_012760_060--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_012760_060--Hb_017434_020 Hb_024357_010 Hb_024357_010 Hb_012760_060--Hb_024357_010 Hb_115158_010 Hb_115158_010 Hb_012760_060--Hb_115158_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69725 77.8587 3.12778 35.549 1.45533 2.73618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.033938 0.0266988 0 14.306 2.67263

CAGE analysis