Hb_000431_070

Information

Type -
Description -
Location Contig431: 104909-109389
Sequence    

Annotation

kegg
ID rcu:RCOM_1677040
description Mitochondrial import receptor subunit TOM20, putative
nr
ID XP_002509514.1
description Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
swissprot
ID P92792
description Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1
trembl
ID B9RBI0
description Mitochondrial import receptor subunit TOM20, putative OS=Ricinus communis GN=RCOM_1677040 PE=4 SV=1
Gene Ontology
ID GO:0005742
description mitochondrial import receptor subunit tom20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42216: 105096-109576
cDNA
(Sanger)
(ID:Location)		 004_F10.ab1: 105096-109372

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_070 0.0 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
2 Hb_007576_170 0.0604254464 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002613_020 0.0653916884 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
4 Hb_000045_310 0.0677226639 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
5 Hb_001279_080 0.0677574648 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
6 Hb_002000_140 0.0736349383 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
7 Hb_087749_010 0.0762533288 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
8 Hb_024650_070 0.0795056189 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
9 Hb_000571_020 0.0802407244 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
10 Hb_033153_060 0.0831685368 - - Transcription elongation factor, putative [Ricinus communis]
11 Hb_007928_030 0.0832068016 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
12 Hb_007827_010 0.0840388163 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
13 Hb_017225_020 0.0842742347 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
14 Hb_027654_050 0.0843812188 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
15 Hb_000566_120 0.0846076466 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
16 Hb_002609_200 0.0855930671 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001329_150 0.0856021037 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
18 Hb_028396_010 0.0861928047 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
19 Hb_004899_370 0.0871989818 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
20 Hb_002110_200 0.088347896 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000431_070 Hb_000431_070 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010 Hb_004459_040 Hb_004459_040 Hb_007576_170--Hb_004459_040 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_033153_060 Hb_033153_060 Hb_007576_170--Hb_033153_060 Hb_006541_010 Hb_006541_010 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_007065_010 Hb_007065_010 Hb_002613_020--Hb_007065_010 Hb_002613_020--Hb_087749_010 Hb_000016_080 Hb_000016_080 Hb_002613_020--Hb_000016_080 Hb_002613_020--Hb_007576_170 Hb_002613_020--Hb_033153_060 Hb_000566_120 Hb_000566_120 Hb_000045_310--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_000045_310--Hb_001931_010 Hb_001279_080--Hb_008071_020 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_001279_080--Hb_000045_310 Hb_001279_080--Hb_000566_120 Hb_000189_240 Hb_000189_240 Hb_002000_140--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_002000_140--Hb_002303_060 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_087749_010--Hb_002798_020 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_087749_010--Hb_033153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7983 7.27651 19.48 20.164 10.9908 16.9606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3653 43.5567 21.6511 17.1798 21.539

CAGE analysis