Hb_000431_140

Information

Type -
Description -
Location Contig431: 157592-159556
Sequence    

Annotation

kegg
ID vvi:100259979
description acetolactate synthase 1, chloroplastic-like
nr
ID XP_002274073.1
description PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
swissprot
ID P09342
description Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1
trembl
ID F6H3X4
description Acetolactate synthase OS=Vitis vinifera GN=VIT_14s0068g01960 PE=3 SV=1
Gene Ontology
ID GO:0009570
description acetolactate synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_140 0.0 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
2 Hb_024948_010 0.1274904019 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
3 Hb_027028_010 0.1633415074 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
4 Hb_003119_120 0.1642777652 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
5 Hb_164300_010 0.1703111257 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
6 Hb_000552_030 0.1721944325 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
7 Hb_010053_010 0.1724532105 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
8 Hb_002805_260 0.1939694291 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001189_160 0.1978290084 - - -
10 Hb_002081_220 0.1985007736 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
11 Hb_001743_080 0.1986386838 - - -
12 Hb_003850_030 0.199680665 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
13 Hb_000755_090 0.2012001737 - - transferase, putative [Ricinus communis]
14 Hb_000057_210 0.2014711766 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
15 Hb_000349_130 0.2019037604 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
16 Hb_132330_010 0.2021337296 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001240_030 0.2044834925 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
18 Hb_002326_160 0.2045757877 - - hypothetical protein JCGZ_04332 [Jatropha curcas]
19 Hb_150093_010 0.2046196179 - - putative polyprotein [Oryza sativa Japonica Group]
20 Hb_188247_020 0.2046766888 - - hypothetical protein, partial [Cecembia lonarensis]

Gene co-expression network

sample Hb_000431_140 Hb_000431_140 Hb_024948_010 Hb_024948_010 Hb_000431_140--Hb_024948_010 Hb_027028_010 Hb_027028_010 Hb_000431_140--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_000431_140--Hb_003119_120 Hb_164300_010 Hb_164300_010 Hb_000431_140--Hb_164300_010 Hb_000552_030 Hb_000552_030 Hb_000431_140--Hb_000552_030 Hb_010053_010 Hb_010053_010 Hb_000431_140--Hb_010053_010 Hb_024948_010--Hb_010053_010 Hb_000128_050 Hb_000128_050 Hb_024948_010--Hb_000128_050 Hb_024948_010--Hb_164300_010 Hb_000832_250 Hb_000832_250 Hb_024948_010--Hb_000832_250 Hb_024948_010--Hb_000552_030 Hb_027028_010--Hb_003119_120 Hb_003549_010 Hb_003549_010 Hb_027028_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_027028_010--Hb_000679_280 Hb_002805_260 Hb_002805_260 Hb_027028_010--Hb_002805_260 Hb_027028_010--Hb_000552_030 Hb_173764_010 Hb_173764_010 Hb_027028_010--Hb_173764_010 Hb_003119_120--Hb_003549_010 Hb_003119_120--Hb_000679_280 Hb_000057_210 Hb_000057_210 Hb_003119_120--Hb_000057_210 Hb_003119_120--Hb_000552_030 Hb_003119_120--Hb_173764_010 Hb_000101_370 Hb_000101_370 Hb_164300_010--Hb_000101_370 Hb_002081_220 Hb_002081_220 Hb_164300_010--Hb_002081_220 Hb_164300_010--Hb_010053_010 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_000215_420 Hb_000215_420 Hb_164300_010--Hb_000215_420 Hb_000552_030--Hb_173764_010 Hb_000552_030--Hb_000128_050 Hb_000552_030--Hb_010053_010 Hb_002081_190 Hb_002081_190 Hb_000552_030--Hb_002081_190 Hb_000552_030--Hb_003549_010 Hb_010053_010--Hb_000128_050 Hb_010053_010--Hb_002081_220 Hb_010053_010--Hb_002081_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.72473 0.127407 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.21777 0.114752

CAGE analysis