Hb_000431_150

Information

Type -
Description -
Location Contig431: 174945-176994
Sequence    

Annotation

kegg
ID rcu:RCOM_1676950
description ribosomal protein L27, putative
nr
ID XP_002509506.1
description ribosomal protein L27, putative [Ricinus communis]
swissprot
ID Q9FLN4
description 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1
trembl
ID B9RBH2
description Ribosomal protein L27, putative OS=Ricinus communis GN=RCOM_1676950 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42225: 174952-176989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_150 0.0 - - ribosomal protein L27, putative [Ricinus communis]
2 Hb_000189_150 0.0962889104 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
3 Hb_021576_080 0.1302983863 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
4 Hb_001711_060 0.140008663 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
5 Hb_001519_170 0.1422416257 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
6 Hb_000152_180 0.1465485087 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
7 Hb_023732_050 0.1642919097 - - aldo-keto reductase, putative [Ricinus communis]
8 Hb_000312_070 0.1666552889 - - conserved hypothetical protein [Ricinus communis]
9 Hb_168440_010 0.1675094001 - - PREDICTED: peroxidase 9 [Jatropha curcas]
10 Hb_001329_090 0.1678952004 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001124_190 0.1679324563 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011476_030 0.1709935896 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
13 Hb_015967_030 0.1714463133 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
14 Hb_000718_040 0.1716686229 - - PREDICTED: lipase member N [Jatropha curcas]
15 Hb_000676_020 0.1739252138 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
16 Hb_169209_010 0.1745533162 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
17 Hb_001541_110 0.1766967378 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_003038_100 0.1770141762 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
19 Hb_009771_060 0.1770583252 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
20 Hb_005332_080 0.1776203723 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000431_150 Hb_000431_150 Hb_000189_150 Hb_000189_150 Hb_000431_150--Hb_000189_150 Hb_021576_080 Hb_021576_080 Hb_000431_150--Hb_021576_080 Hb_001711_060 Hb_001711_060 Hb_000431_150--Hb_001711_060 Hb_001519_170 Hb_001519_170 Hb_000431_150--Hb_001519_170 Hb_000152_180 Hb_000152_180 Hb_000431_150--Hb_000152_180 Hb_023732_050 Hb_023732_050 Hb_000431_150--Hb_023732_050 Hb_000718_040 Hb_000718_040 Hb_000189_150--Hb_000718_040 Hb_000189_150--Hb_000152_180 Hb_011476_030 Hb_011476_030 Hb_000189_150--Hb_011476_030 Hb_000368_120 Hb_000368_120 Hb_000189_150--Hb_000368_120 Hb_011114_020 Hb_011114_020 Hb_000189_150--Hb_011114_020 Hb_001541_110 Hb_001541_110 Hb_021576_080--Hb_001541_110 Hb_000003_780 Hb_000003_780 Hb_021576_080--Hb_000003_780 Hb_005332_080 Hb_005332_080 Hb_021576_080--Hb_005332_080 Hb_000122_190 Hb_000122_190 Hb_021576_080--Hb_000122_190 Hb_001329_090 Hb_001329_090 Hb_021576_080--Hb_001329_090 Hb_001386_090 Hb_001386_090 Hb_001711_060--Hb_001386_090 Hb_001711_060--Hb_001519_170 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_140360_010 Hb_140360_010 Hb_001519_170--Hb_140360_010 Hb_001519_170--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_001519_170--Hb_000000_180 Hb_001366_350 Hb_001366_350 Hb_001519_170--Hb_001366_350 Hb_001519_170--Hb_001386_090 Hb_000312_070 Hb_000312_070 Hb_000152_180--Hb_000312_070 Hb_000152_180--Hb_011476_030 Hb_000152_180--Hb_005332_080 Hb_009771_060 Hb_009771_060 Hb_000152_180--Hb_009771_060 Hb_000152_180--Hb_001541_110 Hb_007217_010 Hb_007217_010 Hb_000152_180--Hb_007217_010 Hb_007694_060 Hb_007694_060 Hb_023732_050--Hb_007694_060 Hb_023732_050--Hb_011114_020 Hb_006620_070 Hb_006620_070 Hb_023732_050--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_023732_050--Hb_004459_060 Hb_003038_100 Hb_003038_100 Hb_023732_050--Hb_003038_100 Hb_001405_090 Hb_001405_090 Hb_023732_050--Hb_001405_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8798 48.4815 389.79 48.1442 29.531 13.4291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.9323 116.342 98.4903 24.3884 221.893

CAGE analysis