Hb_000432_020

Information

Type desease resistance
Description Gene Name: Tropomyosin_1
Location Contig432: 32409-35027
Sequence    

Annotation

kegg
ID pop:POPTR_0017s01630g
description hypothetical protein
nr
ID XP_012086131.1
description PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga3 isoform x9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000432_020 0.0 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
2 Hb_007533_050 0.0950210409 - - -
3 Hb_003414_040 0.0968536576 - - hypothetical protein VITISV_016691 [Vitis vinifera]
4 Hb_003311_020 0.1123142336 - - conserved hypothetical protein [Ricinus communis]
5 Hb_093388_010 0.1141093793 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
6 Hb_151401_010 0.1172629523 - - -
7 Hb_001250_030 0.1175559249 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000405_010 0.1184012413 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
9 Hb_000522_030 0.1187565962 - - hypothetical protein VITISV_006017 [Vitis vinifera]
10 Hb_001490_020 0.1313335299 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_011931_090 0.1314988801 - - -
12 Hb_001383_080 0.1317036016 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
13 Hb_049285_010 0.1332500055 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_005678_030 0.133745131 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
15 Hb_147604_010 0.1360726006 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
16 Hb_002598_030 0.1402557977 - - -
17 Hb_012528_040 0.1428671511 - - -
18 Hb_032016_010 0.1434878788 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
19 Hb_101462_010 0.1478286473 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
20 Hb_000135_080 0.1487655823 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000432_020 Hb_000432_020 Hb_007533_050 Hb_007533_050 Hb_000432_020--Hb_007533_050 Hb_003414_040 Hb_003414_040 Hb_000432_020--Hb_003414_040 Hb_003311_020 Hb_003311_020 Hb_000432_020--Hb_003311_020 Hb_093388_010 Hb_093388_010 Hb_000432_020--Hb_093388_010 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_001250_030 Hb_001250_030 Hb_000432_020--Hb_001250_030 Hb_032016_010 Hb_032016_010 Hb_007533_050--Hb_032016_010 Hb_007533_050--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_006455_020 Hb_006455_020 Hb_007533_050--Hb_006455_020 Hb_001383_080 Hb_001383_080 Hb_003414_040--Hb_001383_080 Hb_003414_040--Hb_093388_010 Hb_003414_040--Hb_001250_030 Hb_003414_040--Hb_003311_020 Hb_001793_040 Hb_001793_040 Hb_003414_040--Hb_001793_040 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_000567_270 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_093388_010--Hb_001250_030 Hb_029510_060 Hb_029510_060 Hb_093388_010--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_093388_010--Hb_023738_010 Hb_005678_030 Hb_005678_030 Hb_093388_010--Hb_005678_030 Hb_151401_010--Hb_007533_050 Hb_144838_010 Hb_144838_010 Hb_151401_010--Hb_144838_010 Hb_151401_010--Hb_003414_040 Hb_151401_010--Hb_003311_020 Hb_151401_010--Hb_093388_010 Hb_001250_030--Hb_029510_060 Hb_001250_030--Hb_023738_010 Hb_001250_030--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0270082 0.012142 0.012405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0348786 0.403927

CAGE analysis