Hb_000432_050

Information

Type -
Description -
Location Contig432: 51264-65201
Sequence    

Annotation

kegg
ID rcu:RCOM_0751130
description GTP-binding protein typa/bipa, putative
nr
ID XP_002529621.1
description GTP-binding protein typa/bipa, putative [Ricinus communis]
swissprot
ID Q8K9C8
description GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=typA PE=3 SV=1
trembl
ID B9SUF2
description GTP-binding protein typa/bipa, putative OS=Ricinus communis GN=RCOM_0751130 PE=4 SV=1
Gene Ontology
ID GO:0003924
description translation factor guf1 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42298: 52821-53210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000432_050 0.0 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
2 Hb_001538_140 0.1068984699 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
3 Hb_029510_040 0.1211598233 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
4 Hb_005839_110 0.1235632602 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
5 Hb_002756_020 0.1253433582 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
6 Hb_009314_010 0.1257981323 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000771_130 0.1275725542 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_000196_080 0.1278173066 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
9 Hb_000162_140 0.1307434016 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
10 Hb_003147_050 0.1331895339 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000454_070 0.1333269668 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
12 Hb_000368_060 0.1349973847 - - thioredoxin H-type 6 [Hevea brasiliensis]
13 Hb_000562_040 0.1369369916 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
14 Hb_000784_030 0.1380012976 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
15 Hb_005539_240 0.1399853362 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
16 Hb_002290_040 0.1431313403 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000723_190 0.1455848478 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_005614_050 0.1474047725 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
19 Hb_000161_150 0.1478305075 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
20 Hb_000016_190 0.1479787968 - - ABC transporter B family member 28 [Glycine soja]

Gene co-expression network

sample Hb_000432_050 Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_005839_110 Hb_005839_110 Hb_000432_050--Hb_005839_110 Hb_002756_020 Hb_002756_020 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130 Hb_003147_050 Hb_003147_050 Hb_001538_140--Hb_003147_050 Hb_002290_040 Hb_002290_040 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_001538_140--Hb_002078_460 Hb_029510_040--Hb_002756_020 Hb_001357_010 Hb_001357_010 Hb_029510_040--Hb_001357_010 Hb_001189_050 Hb_001189_050 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190 Hb_000162_140 Hb_000162_140 Hb_005839_110--Hb_000162_140 Hb_005839_110--Hb_003147_050 Hb_000061_300 Hb_000061_300 Hb_005839_110--Hb_000061_300 Hb_003929_120 Hb_003929_120 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002756_020--Hb_002290_040 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_009314_010--Hb_006816_450 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_009314_010--Hb_000771_130 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000771_130--Hb_000161_150 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.37136 0.149974 0.0759473 0.0315805 0.200106 0.270742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01491 1.07292 1.92104 0.508037 0.156511

CAGE analysis