Hb_000433_050

Information

Type -
Description -
Location Contig433: 113338-113950
Sequence    

Annotation

kegg
ID vvi:100253696
description cell number regulator 1
nr
ID XP_002282134.1
description PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]
swissprot
ID P0CW98
description Protein PLANT CADMIUM RESISTANCE 9 OS=Arabidopsis thaliana GN=PCR9 PE=3 SV=1
trembl
ID I1IYI2
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI5G12460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42376: 112089-127268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000433_050 0.0 - - PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]
2 Hb_179363_010 0.0616609792 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_008651_010 0.104157785 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001515_040 0.1057343059 - - -
5 Hb_000025_490 0.1133548839 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
6 Hb_101437_010 0.1171348094 - - PREDICTED: protein P21-like [Jatropha curcas]
7 Hb_112703_010 0.1172948975 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
8 Hb_020367_010 0.1266080201 - - hypothetical protein PRUPE_ppa004271mg [Prunus persica]
9 Hb_008725_220 0.1318848653 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
10 Hb_156637_010 0.1330130132 - - PREDICTED: aldose reductase-like [Camelina sativa]
11 Hb_011549_020 0.1330343371 - - -
12 Hb_000815_180 0.1331154481 - - -
13 Hb_086063_030 0.1334482764 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
14 Hb_007966_010 0.1335084557 - - carbohydrate binding protein, putative [Ricinus communis]
15 Hb_001740_020 0.1338317281 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
16 Hb_000266_090 0.1340582751 - - -
17 Hb_004785_110 0.1349317613 - - -
18 Hb_000603_060 0.1349386281 - - putative gag protein [Coffea canephora]
19 Hb_000473_130 0.1349402777 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
20 Hb_095589_010 0.1349612323 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000433_050 Hb_000433_050 Hb_179363_010 Hb_179363_010 Hb_000433_050--Hb_179363_010 Hb_008651_010 Hb_008651_010 Hb_000433_050--Hb_008651_010 Hb_001515_040 Hb_001515_040 Hb_000433_050--Hb_001515_040 Hb_000025_490 Hb_000025_490 Hb_000433_050--Hb_000025_490 Hb_101437_010 Hb_101437_010 Hb_000433_050--Hb_101437_010 Hb_112703_010 Hb_112703_010 Hb_000433_050--Hb_112703_010 Hb_179363_010--Hb_008651_010 Hb_179363_010--Hb_112703_010 Hb_032071_010 Hb_032071_010 Hb_179363_010--Hb_032071_010 Hb_002289_180 Hb_002289_180 Hb_179363_010--Hb_002289_180 Hb_179363_010--Hb_001515_040 Hb_008651_010--Hb_112703_010 Hb_008651_010--Hb_002289_180 Hb_008651_010--Hb_032071_010 Hb_010223_010 Hb_010223_010 Hb_008651_010--Hb_010223_010 Hb_020367_010 Hb_020367_010 Hb_001515_040--Hb_020367_010 Hb_008725_220 Hb_008725_220 Hb_001515_040--Hb_008725_220 Hb_001515_040--Hb_000025_490 Hb_001515_040--Hb_101437_010 Hb_000025_490--Hb_008725_220 Hb_002119_030 Hb_002119_030 Hb_000025_490--Hb_002119_030 Hb_000959_240 Hb_000959_240 Hb_000025_490--Hb_000959_240 Hb_167186_010 Hb_167186_010 Hb_000025_490--Hb_167186_010 Hb_000025_490--Hb_101437_010 Hb_101437_010--Hb_008725_220 Hb_101437_010--Hb_000959_240 Hb_101437_010--Hb_020367_010 Hb_112703_010--Hb_002289_180 Hb_112703_010--Hb_032071_010 Hb_000997_130 Hb_000997_130 Hb_112703_010--Hb_000997_130 Hb_000164_160 Hb_000164_160 Hb_112703_010--Hb_000164_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.24925 2.25267 0.162939 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis