Hb_000434_050

Information

Type transcription factor
Description TF Family: ERF
Location Contig434: 30859-31539
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40770g
description Ethylene responsive element binding factor 4 family protein
nr
ID AGL34964.1
description ethylene-responsive transcription factor 5 [Hevea brasiliensis]
swissprot
ID O80340
description Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1
trembl
ID R4N3C9
description Ethylene-responsive transcription factor 5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000434_050 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
2 Hb_185080_010 0.09089984 - - -
3 Hb_078901_010 0.1051315107 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_000015_180 0.1203817638 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
5 Hb_000805_150 0.1223749398 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
6 Hb_010589_130 0.1282597715 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
7 Hb_000220_090 0.1321631674 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
8 Hb_000103_400 0.1331577274 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
9 Hb_158123_010 0.1380807508 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_000532_030 0.1387957908 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
11 Hb_004787_100 0.1423543535 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
12 Hb_000506_140 0.1423897367 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
13 Hb_000245_270 0.1427630098 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_011287_020 0.1446932349 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000181_080 0.1448422936 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
16 Hb_002835_260 0.1483834162 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
17 Hb_102100_010 0.1551589334 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_001504_270 0.1563767119 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
19 Hb_009476_010 0.1567624583 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
20 Hb_016404_010 0.1594816734 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000434_050 Hb_000434_050 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_078901_010 Hb_078901_010 Hb_000434_050--Hb_078901_010 Hb_000015_180 Hb_000015_180 Hb_000434_050--Hb_000015_180 Hb_000805_150 Hb_000805_150 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090 Hb_185080_010--Hb_078901_010 Hb_011287_020 Hb_011287_020 Hb_185080_010--Hb_011287_020 Hb_003375_080 Hb_003375_080 Hb_185080_010--Hb_003375_080 Hb_016404_010 Hb_016404_010 Hb_185080_010--Hb_016404_010 Hb_185080_010--Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_000015_180--Hb_000220_090 Hb_002835_260 Hb_002835_260 Hb_000015_180--Hb_002835_260 Hb_102100_010 Hb_102100_010 Hb_000015_180--Hb_102100_010 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_000805_150--Hb_000245_270 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_000805_150--Hb_011287_020 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_010589_130--Hb_078901_010 Hb_009040_010 Hb_009040_010 Hb_010589_130--Hb_009040_010 Hb_010589_130--Hb_003375_080 Hb_010589_130--Hb_102100_010 Hb_181824_010 Hb_181824_010 Hb_010589_130--Hb_181824_010 Hb_000220_090--Hb_003038_010 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_000220_090--Hb_102100_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.471 935.476 152.365 187.581 12.3856 11.5226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6178 24.3896 21.984 24.6644 59.7937

CAGE analysis