Hb_000436_010

Information

Type -
Description -
Location Contig436: 16089-17877
Sequence    

Annotation

kegg
ID egr:104418981
description probable polyamine transporter At1g31830
nr
ID XP_010028769.1
description PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
swissprot
ID Q9C6S5
description Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1
trembl
ID A0A061DK48
description Amino acid permease family protein OS=Theobroma cacao GN=TCM_001632 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable polyamine transporter at1g31830 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_010 0.0 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
2 Hb_006816_450 0.1341277291 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003878_030 0.1498976464 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
4 Hb_000723_160 0.1555103421 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
5 Hb_007161_010 0.1610268365 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
6 Hb_000179_050 0.1683693857 - - 40S ribosomal protein S17A [Hevea brasiliensis]
7 Hb_001100_010 0.1727258894 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
8 Hb_005298_010 0.1730713066 - - -
9 Hb_001959_160 0.174544322 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
10 Hb_001766_100 0.1772654308 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_014549_020 0.1776850249 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
12 Hb_000749_250 0.1781237701 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
13 Hb_000363_010 0.1794797641 - - -
14 Hb_000196_090 0.1850062714 - - axonemal dynein light chain, putative [Ricinus communis]
15 Hb_003943_030 0.1865514171 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
16 Hb_163950_010 0.1874999111 - - -
17 Hb_005614_050 0.1877296687 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
18 Hb_004116_200 0.1889779771 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
19 Hb_001856_020 0.1908107124 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
20 Hb_009314_010 0.1908151168 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000436_010 Hb_000436_010 Hb_006816_450 Hb_006816_450 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_000723_160 Hb_000723_160 Hb_000436_010--Hb_000723_160 Hb_007161_010 Hb_007161_010 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_001100_010 Hb_001100_010 Hb_000436_010--Hb_001100_010 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_000363_010 Hb_000363_010 Hb_003878_030--Hb_000363_010 Hb_012660_020 Hb_012660_020 Hb_003878_030--Hb_012660_020 Hb_003878_030--Hb_000723_160 Hb_001150_030 Hb_001150_030 Hb_003878_030--Hb_001150_030 Hb_002138_010 Hb_002138_010 Hb_003878_030--Hb_002138_010 Hb_000003_050 Hb_000003_050 Hb_000723_160--Hb_000003_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_001619_080 Hb_001619_080 Hb_000723_160--Hb_001619_080 Hb_000723_160--Hb_006816_450 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_005614_050 Hb_005614_050 Hb_007161_010--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_007161_010--Hb_000363_200 Hb_007161_010--Hb_000179_050 Hb_002078_460 Hb_002078_460 Hb_007161_010--Hb_002078_460 Hb_003551_050 Hb_003551_050 Hb_007161_010--Hb_003551_050 Hb_000753_130 Hb_000753_130 Hb_007161_010--Hb_000753_130 Hb_006153_120 Hb_006153_120 Hb_000179_050--Hb_006153_120 Hb_001856_020 Hb_001856_020 Hb_000179_050--Hb_001856_020 Hb_000179_050--Hb_000196_090 Hb_002849_210 Hb_002849_210 Hb_000179_050--Hb_002849_210 Hb_005147_090 Hb_005147_090 Hb_000179_050--Hb_005147_090 Hb_014549_020 Hb_014549_020 Hb_001100_010--Hb_014549_020 Hb_001100_010--Hb_006816_450 Hb_007304_040 Hb_007304_040 Hb_001100_010--Hb_007304_040 Hb_000157_010 Hb_000157_010 Hb_001100_010--Hb_000157_010 Hb_001766_100 Hb_001766_100 Hb_001100_010--Hb_001766_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96679 1.11293 0.13474 0.0516448 1.41107 0.981382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25245 2.96287 5.20756 2.4402 0

CAGE analysis