Hb_000436_050

Information

Type -
Description -
Location Contig436: 95111-99503
Sequence    

Annotation

kegg
ID rcu:RCOM_0977290
description hypothetical protein
nr
ID XP_012077703.1
description PREDICTED: INO80 complex subunit C [Jatropha curcas]
swissprot
ID Q8BHA0
description INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=2 SV=1
trembl
ID A0A067LEK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17270 PE=4 SV=1
Gene Ontology
ID GO:0031011
description ino80 complex subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42453: 95180-99543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_050 0.0 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]
2 Hb_000008_250 0.0931217871 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000634_100 0.1035414534 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
4 Hb_000056_340 0.1131690476 - - 60S ribosomal protein L34A [Hevea brasiliensis]
5 Hb_000291_210 0.113462465 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
6 Hb_002205_080 0.1149124509 - - 40S ribosomal protein S26, putative [Ricinus communis]
7 Hb_023386_080 0.1162478485 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
8 Hb_042202_010 0.1198044617 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
9 Hb_034299_060 0.1199700164 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
10 Hb_001379_060 0.1202087116 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
11 Hb_001951_110 0.1212569136 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
12 Hb_000085_310 0.1214378162 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
13 Hb_000270_270 0.1218609589 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
14 Hb_003018_200 0.1224862164 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
15 Hb_007101_150 0.1226278531 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
16 Hb_001257_080 0.1243610752 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004108_050 0.1251058036 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
18 Hb_065500_050 0.1252836839 - - lipoate-protein ligase B, putative [Ricinus communis]
19 Hb_000684_090 0.1255707392 transcription factor TF Family: S1Fa-like -
20 Hb_000866_300 0.1256590775 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]

Gene co-expression network

sample Hb_000436_050 Hb_000436_050 Hb_000008_250 Hb_000008_250 Hb_000436_050--Hb_000008_250 Hb_000634_100 Hb_000634_100 Hb_000436_050--Hb_000634_100 Hb_000056_340 Hb_000056_340 Hb_000436_050--Hb_000056_340 Hb_000291_210 Hb_000291_210 Hb_000436_050--Hb_000291_210 Hb_002205_080 Hb_002205_080 Hb_000436_050--Hb_002205_080 Hb_023386_080 Hb_023386_080 Hb_000436_050--Hb_023386_080 Hb_001538_110 Hb_001538_110 Hb_000008_250--Hb_001538_110 Hb_000008_250--Hb_000291_210 Hb_005955_020 Hb_005955_020 Hb_000008_250--Hb_005955_020 Hb_000402_200 Hb_000402_200 Hb_000008_250--Hb_000402_200 Hb_000008_250--Hb_000634_100 Hb_003376_120 Hb_003376_120 Hb_000634_100--Hb_003376_120 Hb_000634_100--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000634_100--Hb_000329_040 Hb_005333_130 Hb_005333_130 Hb_000634_100--Hb_005333_130 Hb_003408_030 Hb_003408_030 Hb_000634_100--Hb_003408_030 Hb_044662_070 Hb_044662_070 Hb_000634_100--Hb_044662_070 Hb_007101_150 Hb_007101_150 Hb_000056_340--Hb_007101_150 Hb_003018_200 Hb_003018_200 Hb_000056_340--Hb_003018_200 Hb_007672_010 Hb_007672_010 Hb_000056_340--Hb_007672_010 Hb_001828_090 Hb_001828_090 Hb_000056_340--Hb_001828_090 Hb_024835_030 Hb_024835_030 Hb_000056_340--Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_000056_340--Hb_004012_010 Hb_006452_060 Hb_006452_060 Hb_000291_210--Hb_006452_060 Hb_002973_080 Hb_002973_080 Hb_000291_210--Hb_002973_080 Hb_000291_210--Hb_000634_100 Hb_000291_210--Hb_000402_200 Hb_001257_080 Hb_001257_080 Hb_002205_080--Hb_001257_080 Hb_000270_270 Hb_000270_270 Hb_002205_080--Hb_000270_270 Hb_001379_060 Hb_001379_060 Hb_002205_080--Hb_001379_060 Hb_002205_080--Hb_007101_150 Hb_002205_080--Hb_001828_090 Hb_002205_080--Hb_003018_200 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_023386_080--Hb_000329_040 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1819 8.94174 12.606 3.09346 49.4405 19.6771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.462 62.0348 44.0695 9.12619 5.31949

CAGE analysis