Hb_000436_070

Information

Type -
Description -
Location Contig436: 119108-123033
Sequence    

Annotation

kegg
ID vvi:100257413
description V-type proton ATPase subunit B 2
nr
ID XP_012077723.1
description PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
swissprot
ID Q9SZN1
description V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=1 SV=1
trembl
ID A0A067KE87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13080 PE=3 SV=1
Gene Ontology
ID GO:0033180
description v-type proton atpase subunit b 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42455: 119096-140773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_070 0.0 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
2 Hb_000120_950 0.0592389066 - - PREDICTED: protein GRIP [Jatropha curcas]
3 Hb_001051_100 0.0691361615 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
4 Hb_002027_130 0.0699493499 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
5 Hb_000620_010 0.0703088876 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
6 Hb_007908_020 0.08159526 - - zinc finger family protein [Populus trichocarpa]
7 Hb_001248_130 0.0826514985 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
8 Hb_000761_020 0.0846213987 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
9 Hb_000190_140 0.0850850144 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
10 Hb_000754_060 0.0862747806 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
11 Hb_019654_100 0.0873606438 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
12 Hb_007594_030 0.0886723118 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
13 Hb_001006_170 0.0897620518 - - Endonuclease V, putative [Ricinus communis]
14 Hb_011918_080 0.09048207 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
15 Hb_000009_170 0.0907837662 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
16 Hb_002477_160 0.0910412478 - - hypothetical protein L484_013453 [Morus notabilis]
17 Hb_000025_200 0.0918684309 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
18 Hb_001360_040 0.0918919751 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
19 Hb_002685_140 0.0936778242 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_002811_360 0.0938269609 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000436_070 Hb_000436_070 Hb_000120_950 Hb_000120_950 Hb_000436_070--Hb_000120_950 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000620_010 Hb_000620_010 Hb_000436_070--Hb_000620_010 Hb_007908_020 Hb_007908_020 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_002477_160 Hb_002477_160 Hb_000120_950--Hb_002477_160 Hb_001051_100--Hb_001248_130 Hb_001329_300 Hb_001329_300 Hb_001051_100--Hb_001329_300 Hb_000110_160 Hb_000110_160 Hb_001051_100--Hb_000110_160 Hb_000001_140 Hb_000001_140 Hb_001051_100--Hb_000001_140 Hb_002006_090 Hb_002006_090 Hb_001051_100--Hb_002006_090 Hb_002027_130--Hb_007908_020 Hb_000025_200 Hb_000025_200 Hb_002027_130--Hb_000025_200 Hb_000001_020 Hb_000001_020 Hb_002027_130--Hb_000001_020 Hb_003609_040 Hb_003609_040 Hb_002027_130--Hb_003609_040 Hb_002027_130--Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_007908_020--Hb_000025_200 Hb_007908_020--Hb_002477_160 Hb_007908_020--Hb_000120_950 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_000567_260 Hb_000567_260 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
158.833 52.5007 62.9322 70.3977 151.857 145.867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.507 88.4806 202.599 60.2451 31.254

CAGE analysis