Hb_000436_080

Information

Type -
Description -
Location Contig436: 137637-140419
Sequence    

Annotation

kegg
ID egr:104452787
description V-type proton ATPase subunit B 1-like
nr
ID CDP14545.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068V178
description Coffea canephora DH200=94 genomic scaffold, scaffold_87 OS=Coffea canephora GN=GSCOC_T00041064001 PE=4 SV=1
Gene Ontology
ID GO:0015992
description v-type proton atpase subunit b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42455: 119096-140773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_080 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_001433_220 0.1329291608 - - protein phosphatase, putative [Ricinus communis]
3 Hb_001260_030 0.1448977289 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000914_070 0.1459191415 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
5 Hb_007763_060 0.1460678429 - - BnaA02g23510D [Brassica napus]
6 Hb_006198_080 0.1566612527 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
7 Hb_000031_030 0.1631413739 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
8 Hb_008511_050 0.1635756159 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
9 Hb_000380_010 0.1658613507 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
10 Hb_000347_200 0.1661008329 - - lsm1, putative [Ricinus communis]
11 Hb_000696_350 0.1692920958 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
12 Hb_006487_060 0.1699265096 - - Defective in cullin neddylation protein, putative [Ricinus communis]
13 Hb_006935_050 0.1701132358 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
14 Hb_168973_010 0.1704216332 - - -
15 Hb_000229_040 0.1723490233 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
16 Hb_000898_050 0.1727991649 - - -
17 Hb_037887_010 0.1735289023 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_001124_080 0.1735528121 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
19 Hb_005271_150 0.1737883517 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
20 Hb_008096_030 0.1758573491 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]

Gene co-expression network

sample Hb_000436_080 Hb_000436_080 Hb_001433_220 Hb_001433_220 Hb_000436_080--Hb_001433_220 Hb_001260_030 Hb_001260_030 Hb_000436_080--Hb_001260_030 Hb_000914_070 Hb_000914_070 Hb_000436_080--Hb_000914_070 Hb_007763_060 Hb_007763_060 Hb_000436_080--Hb_007763_060 Hb_006198_080 Hb_006198_080 Hb_000436_080--Hb_006198_080 Hb_000031_030 Hb_000031_030 Hb_000436_080--Hb_000031_030 Hb_006935_050 Hb_006935_050 Hb_001433_220--Hb_006935_050 Hb_000229_040 Hb_000229_040 Hb_001433_220--Hb_000229_040 Hb_003195_060 Hb_003195_060 Hb_001433_220--Hb_003195_060 Hb_000049_070 Hb_000049_070 Hb_001433_220--Hb_000049_070 Hb_063134_010 Hb_063134_010 Hb_001433_220--Hb_063134_010 Hb_002482_060 Hb_002482_060 Hb_001260_030--Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_001260_030--Hb_000120_190 Hb_001260_030--Hb_007763_060 Hb_001998_140 Hb_001998_140 Hb_001260_030--Hb_001998_140 Hb_006198_090 Hb_006198_090 Hb_001260_030--Hb_006198_090 Hb_000364_150 Hb_000364_150 Hb_000914_070--Hb_000364_150 Hb_012490_040 Hb_012490_040 Hb_000914_070--Hb_012490_040 Hb_005117_010 Hb_005117_010 Hb_000914_070--Hb_005117_010 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_004055_140 Hb_004055_140 Hb_000914_070--Hb_004055_140 Hb_006487_060 Hb_006487_060 Hb_007763_060--Hb_006487_060 Hb_008096_030 Hb_008096_030 Hb_007763_060--Hb_008096_030 Hb_152554_010 Hb_152554_010 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_168973_010 Hb_168973_010 Hb_007763_060--Hb_168973_010 Hb_007763_060--Hb_002482_060 Hb_003092_030 Hb_003092_030 Hb_006198_080--Hb_003092_030 Hb_000700_110 Hb_000700_110 Hb_006198_080--Hb_000700_110 Hb_006198_080--Hb_000347_200 Hb_037887_010 Hb_037887_010 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_021238_050 Hb_021238_050 Hb_006198_080--Hb_021238_050 Hb_000364_010 Hb_000364_010 Hb_000031_030--Hb_000364_010 Hb_000204_040 Hb_000204_040 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_006487_050 Hb_006487_050 Hb_000031_030--Hb_006487_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.7464 16.2888 14.3986 119.751 67.2223 279.014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.466 55.5144 187.796 50.2651 27.0726

CAGE analysis