Hb_000436_110

Information

Type -
Description -
Location Contig436: 203168-207149
Sequence    

Annotation

kegg
ID rcu:RCOM_0977480
description hypothetical protein
nr
ID XP_011046654.1
description PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S5K1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0977480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42459: 203607-204287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_110 0.0 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
2 Hb_008165_010 0.0384168711 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
3 Hb_010737_030 0.0439737896 - - unnamed protein product [Vitis vinifera]
4 Hb_102900_010 0.0485341731 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
5 Hb_018663_010 0.0539623409 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
6 Hb_000751_010 0.0664240684 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003226_040 0.0696574431 - - PREDICTED: endoglucanase 17 [Populus euphratica]
8 Hb_000496_100 0.0740942337 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
9 Hb_002235_260 0.0748854149 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
10 Hb_031862_190 0.0806853437 - - -
11 Hb_004117_060 0.081392931 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
12 Hb_001926_010 0.0815091114 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
13 Hb_102129_040 0.0834221071 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
14 Hb_000375_200 0.0846641029 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
15 Hb_000243_180 0.0854571245 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
16 Hb_052530_010 0.0876258783 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
17 Hb_000160_260 0.090679865 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_001921_040 0.0930875337 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
19 Hb_000187_020 0.0964062354 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
20 Hb_000051_130 0.0978508687 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000436_110 Hb_000436_110 Hb_008165_010 Hb_008165_010 Hb_000436_110--Hb_008165_010 Hb_010737_030 Hb_010737_030 Hb_000436_110--Hb_010737_030 Hb_102900_010 Hb_102900_010 Hb_000436_110--Hb_102900_010 Hb_018663_010 Hb_018663_010 Hb_000436_110--Hb_018663_010 Hb_000751_010 Hb_000751_010 Hb_000436_110--Hb_000751_010 Hb_003226_040 Hb_003226_040 Hb_000436_110--Hb_003226_040 Hb_008165_010--Hb_102900_010 Hb_008165_010--Hb_018663_010 Hb_008165_010--Hb_010737_030 Hb_002235_260 Hb_002235_260 Hb_008165_010--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_008165_010--Hb_004117_060 Hb_000496_100 Hb_000496_100 Hb_010737_030--Hb_000496_100 Hb_010737_030--Hb_018663_010 Hb_010737_030--Hb_102900_010 Hb_000375_200 Hb_000375_200 Hb_010737_030--Hb_000375_200 Hb_102900_010--Hb_000751_010 Hb_102129_040 Hb_102129_040 Hb_102900_010--Hb_102129_040 Hb_102900_010--Hb_018663_010 Hb_018663_010--Hb_000375_200 Hb_018663_010--Hb_000496_100 Hb_000751_010--Hb_102129_040 Hb_006586_060 Hb_006586_060 Hb_000751_010--Hb_006586_060 Hb_031862_190 Hb_031862_190 Hb_000751_010--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_000751_010--Hb_001329_060 Hb_003411_070 Hb_003411_070 Hb_000751_010--Hb_003411_070 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_003226_040--Hb_003464_040 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_003226_040--Hb_004117_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00748135 1.98777 0.353212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.30906

CAGE analysis