Hb_000438_020

Information

Type -
Description -
Location Contig438: 22335-27544
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_002520787.1
description leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9S468
description Leucine-rich repeat-containing protein 2, lrrc2, putative OS=Ricinus communis GN=RCOM_0687360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42554: 5006-22840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_020 0.0 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
2 Hb_002099_060 0.0916270346 - - Protein AFR, putative [Ricinus communis]
3 Hb_000418_150 0.0929950309 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_029748_020 0.11256622 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003177_090 0.1153843517 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
6 Hb_001307_200 0.1182636407 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
7 Hb_001689_030 0.12040396 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
8 Hb_002888_040 0.1209920692 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
9 Hb_000100_210 0.1231591141 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
10 Hb_073973_020 0.1274960885 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
11 Hb_002344_080 0.1282496787 - - PREDICTED: protein YLS2-like [Populus euphratica]
12 Hb_001496_120 0.1292948104 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
13 Hb_004864_020 0.12954217 - - Polyprotein, putative [Solanum demissum]
14 Hb_005288_210 0.1306797427 - - hypothetical protein VITISV_017217 [Vitis vinifera]
15 Hb_002833_020 0.1307124812 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_005724_040 0.1307585548 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
17 Hb_025045_010 0.1335416435 - - catalytic, putative [Ricinus communis]
18 Hb_002740_100 0.1352761925 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
19 Hb_002686_210 0.1363319067 - - zinc finger protein, putative [Ricinus communis]
20 Hb_155150_010 0.1386991574 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000438_020 Hb_000438_020 Hb_002099_060 Hb_002099_060 Hb_000438_020--Hb_002099_060 Hb_000418_150 Hb_000418_150 Hb_000438_020--Hb_000418_150 Hb_029748_020 Hb_029748_020 Hb_000438_020--Hb_029748_020 Hb_003177_090 Hb_003177_090 Hb_000438_020--Hb_003177_090 Hb_001307_200 Hb_001307_200 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_002099_060--Hb_000418_150 Hb_000757_020 Hb_000757_020 Hb_000418_150--Hb_000757_020 Hb_000418_150--Hb_004864_020 Hb_000418_150--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120 Hb_000100_210 Hb_000100_210 Hb_029748_020--Hb_000100_210 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_001522_040 Hb_001522_040 Hb_029748_020--Hb_001522_040 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_003177_090--Hb_000757_020 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_073973_020 Hb_073973_020 Hb_001307_200--Hb_073973_020 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001268_300 Hb_001268_300 Hb_001307_200--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_001307_200--Hb_002888_040 Hb_000221_180 Hb_000221_180 Hb_001307_200--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_001307_200--Hb_000417_410 Hb_001689_030--Hb_002344_080 Hb_000103_410 Hb_000103_410 Hb_001689_030--Hb_000103_410 Hb_001689_030--Hb_002888_040 Hb_000816_160 Hb_000816_160 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.424399 4.03115 2.48802 3.56364 0.666395 0.419294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.247648 0.0749488 0.0285334 3.27559 4.45347

CAGE analysis