Hb_000438_030

Information

Type -
Description -
Location Contig438: 44684-45899
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42558: 44669-45529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_030 0.0 - - -
2 Hb_147060_010 0.0202660909 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
3 Hb_010812_130 0.0231471001 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
4 Hb_046615_040 0.0451345982 - - unnamed protein product [Vitis vinifera]
5 Hb_003010_050 0.0485329931 - - -
6 Hb_151094_020 0.0533591552 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
7 Hb_005306_060 0.0736060778 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
8 Hb_000163_020 0.0972311444 - - -
9 Hb_001006_050 0.1058787358 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
10 Hb_002498_290 0.1137303609 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
11 Hb_010369_020 0.1160174742 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
12 Hb_135673_010 0.1214765208 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
13 Hb_103452_010 0.1237776287 - - hypothetical protein VITISV_027174 [Vitis vinifera]
14 Hb_004116_090 0.1292884472 - - -
15 Hb_030736_030 0.1309266008 - - hypothetical protein VITISV_006651 [Vitis vinifera]
16 Hb_000679_280 0.1327878517 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
17 Hb_005356_030 0.1359863091 - - protein binding protein, putative [Ricinus communis]
18 Hb_001862_160 0.1377616609 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
19 Hb_003549_010 0.1388871967 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
20 Hb_000979_070 0.1472365333 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000438_030 Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000438_030--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_000438_030--Hb_010812_130 Hb_046615_040 Hb_046615_040 Hb_000438_030--Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_000438_030--Hb_003010_050 Hb_151094_020 Hb_151094_020 Hb_000438_030--Hb_151094_020 Hb_005306_060 Hb_005306_060 Hb_000438_030--Hb_005306_060 Hb_147060_010--Hb_010812_130 Hb_147060_010--Hb_046615_040 Hb_147060_010--Hb_003010_050 Hb_147060_010--Hb_151094_020 Hb_147060_010--Hb_005306_060 Hb_010812_130--Hb_046615_040 Hb_010812_130--Hb_003010_050 Hb_010812_130--Hb_151094_020 Hb_010812_130--Hb_005306_060 Hb_046615_040--Hb_003010_050 Hb_046615_040--Hb_005306_060 Hb_046615_040--Hb_151094_020 Hb_003010_050--Hb_005306_060 Hb_000163_020 Hb_000163_020 Hb_003010_050--Hb_000163_020 Hb_001006_050 Hb_001006_050 Hb_151094_020--Hb_001006_050 Hb_135673_010 Hb_135673_010 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010 Hb_005306_060--Hb_000163_020 Hb_010369_020 Hb_010369_020 Hb_005306_060--Hb_010369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.853052 0.584647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.394423 0

CAGE analysis