Hb_000438_090

Information

Type -
Description -
Location Contig438: 77683-82703
Sequence    

Annotation

kegg
ID rcu:RCOM_0689470
description hypothetical protein
nr
ID XP_012091169.1
description PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
swissprot
ID Q501D5
description Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1
trembl
ID A0A067JNU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03341 PE=4 SV=1
Gene Ontology
ID GO:0009941
description mini-chromosome maintenance complex-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42559: 77691-82722 , PASA_asmbl_42560: 82154-82282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_090 0.0 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
2 Hb_164945_010 0.1167804494 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
3 Hb_010789_020 0.1372662862 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
4 Hb_089140_120 0.1410681364 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
5 Hb_007163_060 0.1417698617 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
6 Hb_000320_050 0.1449055802 - - bcr-associated protein, bap, putative [Ricinus communis]
7 Hb_000122_010 0.1460576746 - - amino acid transporter, putative [Ricinus communis]
8 Hb_010053_040 0.1500655242 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
9 Hb_003305_030 0.1501717773 - - -
10 Hb_001307_190 0.1521248103 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_000046_080 0.1533421484 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
12 Hb_171718_020 0.1554705311 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
13 Hb_163591_010 0.1566058654 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
14 Hb_004800_150 0.1583483459 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
15 Hb_004611_030 0.1588790288 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
16 Hb_009393_200 0.160813734 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
17 Hb_073171_090 0.1648432554 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
18 Hb_007894_210 0.1663536055 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
19 Hb_001005_160 0.1671043046 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003746_030 0.1674734456 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000438_090 Hb_000438_090 Hb_164945_010 Hb_164945_010 Hb_000438_090--Hb_164945_010 Hb_010789_020 Hb_010789_020 Hb_000438_090--Hb_010789_020 Hb_089140_120 Hb_089140_120 Hb_000438_090--Hb_089140_120 Hb_007163_060 Hb_007163_060 Hb_000438_090--Hb_007163_060 Hb_000320_050 Hb_000320_050 Hb_000438_090--Hb_000320_050 Hb_000122_010 Hb_000122_010 Hb_000438_090--Hb_000122_010 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010 Hb_010789_020--Hb_164945_010 Hb_000580_100 Hb_000580_100 Hb_010789_020--Hb_000580_100 Hb_011671_480 Hb_011671_480 Hb_010789_020--Hb_011671_480 Hb_010381_010 Hb_010381_010 Hb_010789_020--Hb_010381_010 Hb_039021_010 Hb_039021_010 Hb_010789_020--Hb_039021_010 Hb_000622_200 Hb_000622_200 Hb_010789_020--Hb_000622_200 Hb_089140_120--Hb_010789_020 Hb_001486_020 Hb_001486_020 Hb_089140_120--Hb_001486_020 Hb_000743_030 Hb_000743_030 Hb_089140_120--Hb_000743_030 Hb_001911_040 Hb_001911_040 Hb_089140_120--Hb_001911_040 Hb_010053_040 Hb_010053_040 Hb_089140_120--Hb_010053_040 Hb_007163_060--Hb_005322_050 Hb_172257_010 Hb_172257_010 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_000300_550 Hb_000300_550 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_000668_060 Hb_000668_060 Hb_000320_050--Hb_000668_060 Hb_000009_610 Hb_000009_610 Hb_000320_050--Hb_000009_610 Hb_003605_040 Hb_003605_040 Hb_000320_050--Hb_003605_040 Hb_000320_050--Hb_164945_010 Hb_010812_070 Hb_010812_070 Hb_000320_050--Hb_010812_070 Hb_009393_200 Hb_009393_200 Hb_000122_010--Hb_009393_200 Hb_000186_330 Hb_000186_330 Hb_000122_010--Hb_000186_330 Hb_000122_010--Hb_007163_060 Hb_008511_060 Hb_008511_060 Hb_000122_010--Hb_008511_060 Hb_000122_010--Hb_010053_040 Hb_005656_080 Hb_005656_080 Hb_000122_010--Hb_005656_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73956 6.47082 12.6217 11.3353 5.74828 4.58381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28425 3.61011 0.359699 3.58525 0.841694

CAGE analysis