Hb_000438_140

Information

Type -
Description -
Location Contig438: 119273-124763
Sequence    

Annotation

kegg
ID cic:CICLE_v10031841mg
description hypothetical protein
nr
ID KDO44307.1
description hypothetical protein CISIN_1g018088mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DZ91
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018088mg PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42569: 119559-124732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_140 0.0 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
2 Hb_016219_030 0.0800174449 - - cytochrome P450, putative [Ricinus communis]
3 Hb_012506_070 0.0948807922 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
4 Hb_008695_200 0.098440404 - - Protein grpE, putative [Ricinus communis]
5 Hb_004440_060 0.1084494761 - - aldose 1-epimerase, putative [Ricinus communis]
6 Hb_002053_010 0.1087167534 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
7 Hb_000200_010 0.1145306605 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
8 Hb_134849_010 0.1154237851 - - ATP synthase subunit d, putative [Ricinus communis]
9 Hb_016219_010 0.1165501316 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
10 Hb_001898_180 0.118638771 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
11 Hb_002272_270 0.119093418 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_000032_500 0.119328213 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_003994_160 0.1193991851 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
14 Hb_000086_080 0.1209003247 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001789_200 0.1218597788 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
16 Hb_001105_040 0.1219524135 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001369_790 0.1225830839 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
18 Hb_000023_360 0.123022272 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
19 Hb_001578_020 0.1248982579 - - Protein virR, putative [Ricinus communis]
20 Hb_055619_010 0.1256808765 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000438_140 Hb_000438_140 Hb_016219_030 Hb_016219_030 Hb_000438_140--Hb_016219_030 Hb_012506_070 Hb_012506_070 Hb_000438_140--Hb_012506_070 Hb_008695_200 Hb_008695_200 Hb_000438_140--Hb_008695_200 Hb_004440_060 Hb_004440_060 Hb_000438_140--Hb_004440_060 Hb_002053_010 Hb_002053_010 Hb_000438_140--Hb_002053_010 Hb_000200_010 Hb_000200_010 Hb_000438_140--Hb_000200_010 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_012506_070--Hb_000200_010 Hb_001109_050 Hb_001109_050 Hb_012506_070--Hb_001109_050 Hb_113853_010 Hb_113853_010 Hb_012506_070--Hb_113853_010 Hb_134849_010 Hb_134849_010 Hb_012506_070--Hb_134849_010 Hb_001277_030 Hb_001277_030 Hb_012506_070--Hb_001277_030 Hb_003994_160 Hb_003994_160 Hb_008695_200--Hb_003994_160 Hb_008695_200--Hb_002053_010 Hb_000086_080 Hb_000086_080 Hb_008695_200--Hb_000086_080 Hb_001369_790 Hb_001369_790 Hb_008695_200--Hb_001369_790 Hb_003053_110 Hb_003053_110 Hb_008695_200--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_008695_200--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_004440_060--Hb_001369_790 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030 Hb_002053_010--Hb_001789_200 Hb_002053_010--Hb_001369_790 Hb_002053_010--Hb_000086_080 Hb_000200_010--Hb_000032_500 Hb_000200_010--Hb_134849_010 Hb_003142_010 Hb_003142_010 Hb_000200_010--Hb_003142_010 Hb_001677_220 Hb_001677_220 Hb_000200_010--Hb_001677_220 Hb_000200_010--Hb_001105_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36894 1.95373 4.53842 5.23713 0.912089 1.99326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65186 4.8298 0.822515 3.19878 7.45143

CAGE analysis