Hb_000438_160

Information

Type -
Description -
Location Contig438: 128718-131607
Sequence    

Annotation

kegg
ID rcu:RCOM_0689280
description hypothetical protein
nr
ID XP_002520839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5XVC7
description WEB family protein At2g40480 OS=Arabidopsis thaliana GN=At2g40480 PE=2 SV=1
trembl
ID B9S4C0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0689280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42573: 128712-131401 , PASA_asmbl_42574: 128712-131392 , PASA_asmbl_42575: 131728-131986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001140_190 0.1176564169 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
3 Hb_000017_200 0.1229986568 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
4 Hb_000331_170 0.1353006077 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
5 Hb_000071_060 0.136853224 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000932_110 0.1401725185 - - Root phototropism protein, putative [Ricinus communis]
7 Hb_001491_020 0.1422322718 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_004007_140 0.1428271098 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
9 Hb_004143_090 0.1451459561 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_005276_140 0.1452721646 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001439_080 0.1507676546 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_001511_210 0.1509346405 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
13 Hb_132840_190 0.1522898794 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_011033_010 0.1524051713 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_005890_020 0.1528926936 - - putative plant disease resistance family protein [Populus trichocarpa]
16 Hb_004453_160 0.1533309146 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001817_040 0.1547736665 - - myosin XI, putative [Ricinus communis]
18 Hb_000243_230 0.1547867693 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000925_150 0.1551332332 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
20 Hb_018133_070 0.155560131 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]

Gene co-expression network

sample Hb_000438_160 Hb_000438_160 Hb_001140_190 Hb_001140_190 Hb_000438_160--Hb_001140_190 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000331_170 Hb_000331_170 Hb_000438_160--Hb_000331_170 Hb_000071_060 Hb_000071_060 Hb_000438_160--Hb_000071_060 Hb_000932_110 Hb_000932_110 Hb_000438_160--Hb_000932_110 Hb_001491_020 Hb_001491_020 Hb_000438_160--Hb_001491_020 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_001140_190--Hb_000071_060 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_001439_080 Hb_001439_080 Hb_000017_200--Hb_001439_080 Hb_007617_010 Hb_007617_010 Hb_000017_200--Hb_007617_010 Hb_051663_010 Hb_051663_010 Hb_000017_200--Hb_051663_010 Hb_168918_010 Hb_168918_010 Hb_000017_200--Hb_168918_010 Hb_000922_200 Hb_000922_200 Hb_000017_200--Hb_000922_200 Hb_001080_190 Hb_001080_190 Hb_000017_200--Hb_001080_190 Hb_000031_240 Hb_000031_240 Hb_000331_170--Hb_000031_240 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_004453_160 Hb_004453_160 Hb_000331_170--Hb_004453_160 Hb_000243_230 Hb_000243_230 Hb_000071_060--Hb_000243_230 Hb_008686_040 Hb_008686_040 Hb_000071_060--Hb_008686_040 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000072_230 Hb_000072_230 Hb_000071_060--Hb_000072_230 Hb_007479_010 Hb_007479_010 Hb_000932_110--Hb_007479_010 Hb_000932_110--Hb_001140_190 Hb_018133_070 Hb_018133_070 Hb_000932_110--Hb_018133_070 Hb_003581_230 Hb_003581_230 Hb_000932_110--Hb_003581_230 Hb_029576_060 Hb_029576_060 Hb_000932_110--Hb_029576_060 Hb_001544_050 Hb_001544_050 Hb_001491_020--Hb_001544_050 Hb_001504_210 Hb_001504_210 Hb_001491_020--Hb_001504_210 Hb_000465_410 Hb_000465_410 Hb_001491_020--Hb_000465_410 Hb_000847_130 Hb_000847_130 Hb_001491_020--Hb_000847_130 Hb_001491_020--Hb_001817_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.309749 0.659974 39.4997 26.5353 2.25332 0.309902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336286 0.0992272 1.1623 0.341932 16.8769

CAGE analysis