Hb_000438_170

Information

Type -
Description -
Location Contig438: 133203-137156
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_170 0.0 - - -
2 Hb_000462_140 0.1149065251 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
3 Hb_000789_090 0.115337445 - - hypothetical protein 17 [Hevea brasiliensis]
4 Hb_000109_090 0.1159187427 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
5 Hb_002284_090 0.1184328623 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
6 Hb_000710_010 0.1199178852 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
7 Hb_028347_010 0.1200425797 - - -
8 Hb_001348_070 0.120432596 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_007919_060 0.1212318009 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
10 Hb_006198_110 0.1219307777 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
11 Hb_011381_060 0.1238339378 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
12 Hb_007154_020 0.1238540497 - - -
13 Hb_002045_040 0.1271765945 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_022250_030 0.1275028834 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003185_080 0.1323501288 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
16 Hb_000573_070 0.1324344726 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
17 Hb_013405_060 0.132740045 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
18 Hb_006816_220 0.1329663971 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
19 Hb_001951_140 0.1330031627 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
20 Hb_181288_010 0.1332991289 - - rac-GTP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000438_170 Hb_000438_170 Hb_000462_140 Hb_000462_140 Hb_000438_170--Hb_000462_140 Hb_000789_090 Hb_000789_090 Hb_000438_170--Hb_000789_090 Hb_000109_090 Hb_000109_090 Hb_000438_170--Hb_000109_090 Hb_002284_090 Hb_002284_090 Hb_000438_170--Hb_002284_090 Hb_000710_010 Hb_000710_010 Hb_000438_170--Hb_000710_010 Hb_028347_010 Hb_028347_010 Hb_000438_170--Hb_028347_010 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030 Hb_000789_090--Hb_002284_090 Hb_004046_040 Hb_004046_040 Hb_000789_090--Hb_004046_040 Hb_000699_130 Hb_000699_130 Hb_000789_090--Hb_000699_130 Hb_012675_090 Hb_012675_090 Hb_000789_090--Hb_012675_090 Hb_001124_120 Hb_001124_120 Hb_000789_090--Hb_001124_120 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_010921_010 Hb_010921_010 Hb_000109_090--Hb_010921_010 Hb_003398_130 Hb_003398_130 Hb_000109_090--Hb_003398_130 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_002284_090--Hb_003398_130 Hb_001278_110 Hb_001278_110 Hb_002284_090--Hb_001278_110 Hb_005306_170 Hb_005306_170 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_021576_040 Hb_021576_040 Hb_000710_010--Hb_021576_040 Hb_002234_140 Hb_002234_140 Hb_000710_010--Hb_002234_140 Hb_001427_050 Hb_001427_050 Hb_000710_010--Hb_001427_050 Hb_008112_040 Hb_008112_040 Hb_000710_010--Hb_008112_040 Hb_003687_230 Hb_003687_230 Hb_000710_010--Hb_003687_230 Hb_027760_010 Hb_027760_010 Hb_028347_010--Hb_027760_010 Hb_000684_090 Hb_000684_090 Hb_028347_010--Hb_000684_090 Hb_011381_060 Hb_011381_060 Hb_028347_010--Hb_011381_060 Hb_001951_140 Hb_001951_140 Hb_028347_010--Hb_001951_140 Hb_028347_010--Hb_000887_020 Hb_002045_040 Hb_002045_040 Hb_028347_010--Hb_002045_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3384 4.46866 5.52323 1.25337 9.53511 7.79451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7896 13.8791 2.65303 3.20273 3.97031

CAGE analysis