Hb_000438_200

Information

Type -
Description -
Location Contig438: 157384-161173
Sequence    

Annotation

kegg
ID rcu:RCOM_0688830
description oligopeptide transporter, putative
nr
ID XP_012091190.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
swissprot
ID Q8VZR7
description Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana GN=NPF5.1 PE=2 SV=2
trembl
ID A0A067JD01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03353 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42578: 157279-161236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_200 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
2 Hb_115962_010 0.0610293863 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_018563_010 0.0916644972 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
4 Hb_000049_030 0.0922590172 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012496_020 0.0935041402 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_167206_010 0.0973523325 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
7 Hb_001025_140 0.1070131857 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
8 Hb_003502_040 0.1153731036 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
9 Hb_004553_040 0.1184488733 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_000059_030 0.1186405203 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
11 Hb_059318_010 0.1246117599 - - glutamate receptor 2 plant, putative [Ricinus communis]
12 Hb_009421_090 0.1298966965 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
13 Hb_000035_140 0.1299134328 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
14 Hb_004316_020 0.1303610769 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
15 Hb_186995_010 0.1328754129 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
16 Hb_000392_170 0.134876468 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
17 Hb_011794_050 0.1356784356 - - transcription factor, putative [Ricinus communis]
18 Hb_006873_010 0.1366987855 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_189208_060 0.1382661736 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
20 Hb_029262_010 0.1389959176 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]

Gene co-expression network

sample Hb_000438_200 Hb_000438_200 Hb_115962_010 Hb_115962_010 Hb_000438_200--Hb_115962_010 Hb_018563_010 Hb_018563_010 Hb_000438_200--Hb_018563_010 Hb_000049_030 Hb_000049_030 Hb_000438_200--Hb_000049_030 Hb_012496_020 Hb_012496_020 Hb_000438_200--Hb_012496_020 Hb_167206_010 Hb_167206_010 Hb_000438_200--Hb_167206_010 Hb_001025_140 Hb_001025_140 Hb_000438_200--Hb_001025_140 Hb_115962_010--Hb_000049_030 Hb_000035_140 Hb_000035_140 Hb_115962_010--Hb_000035_140 Hb_115962_010--Hb_012496_020 Hb_009421_090 Hb_009421_090 Hb_115962_010--Hb_009421_090 Hb_115962_010--Hb_001025_140 Hb_004553_040 Hb_004553_040 Hb_018563_010--Hb_004553_040 Hb_018563_010--Hb_167206_010 Hb_003502_040 Hb_003502_040 Hb_018563_010--Hb_003502_040 Hb_000319_010 Hb_000319_010 Hb_018563_010--Hb_000319_010 Hb_003248_030 Hb_003248_030 Hb_018563_010--Hb_003248_030 Hb_059429_010 Hb_059429_010 Hb_000049_030--Hb_059429_010 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_001983_040 Hb_001983_040 Hb_000049_030--Hb_001983_040 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010 Hb_186995_010 Hb_186995_010 Hb_012496_020--Hb_186995_010 Hb_012496_020--Hb_167206_010 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_005381_010 Hb_005381_010 Hb_012496_020--Hb_005381_010 Hb_167206_010--Hb_004553_040 Hb_167206_010--Hb_186995_010 Hb_001277_370 Hb_001277_370 Hb_167206_010--Hb_001277_370 Hb_167206_010--Hb_000319_010 Hb_004223_080 Hb_004223_080 Hb_001025_140--Hb_004223_080 Hb_000059_030 Hb_000059_030 Hb_001025_140--Hb_000059_030 Hb_001638_120 Hb_001638_120 Hb_001025_140--Hb_001638_120 Hb_001025_140--Hb_000049_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.2745 30.6595 12.53 0.0426992 0.0203671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.050112 0.019714 0 0.0314022 6.14813

CAGE analysis