Hb_000438_220

Information

Type -
Description -
Location Contig438: 185525-195378
Sequence    

Annotation

kegg
ID rcu:RCOM_0688790
description hypothetical protein
nr
ID XP_012091192.1
description PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S4B1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42579: 185654-194317
cDNA
(Sanger)
(ID:Location)		 051_O07.ab1: 185882-194313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_220 0.0 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
2 Hb_002316_060 0.0710320185 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
3 Hb_003641_020 0.0832295548 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
4 Hb_012368_020 0.0844992935 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
5 Hb_004129_040 0.0845653926 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
6 Hb_000307_090 0.0930712421 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
7 Hb_001638_260 0.0934928847 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
8 Hb_000574_160 0.0944829268 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
9 Hb_001214_140 0.0961687891 - - 60S ribosomal protein L27a, putative [Ricinus communis]
10 Hb_012573_070 0.0971960407 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007944_040 0.0972932372 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
12 Hb_011311_010 0.0987991127 - - 60S ribosomal protein L27C [Hevea brasiliensis]
13 Hb_000970_010 0.0996531746 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
14 Hb_001269_270 0.1005232471 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_008173_090 0.1019496584 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_001314_100 0.1024119963 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
17 Hb_001080_080 0.1027384881 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
18 Hb_000334_210 0.102905648 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
19 Hb_000111_340 0.1032438426 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
20 Hb_000340_140 0.1036569091 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]

Gene co-expression network

sample Hb_000438_220 Hb_000438_220 Hb_002316_060 Hb_002316_060 Hb_000438_220--Hb_002316_060 Hb_003641_020 Hb_003641_020 Hb_000438_220--Hb_003641_020 Hb_012368_020 Hb_012368_020 Hb_000438_220--Hb_012368_020 Hb_004129_040 Hb_004129_040 Hb_000438_220--Hb_004129_040 Hb_000307_090 Hb_000307_090 Hb_000438_220--Hb_000307_090 Hb_001638_260 Hb_001638_260 Hb_000438_220--Hb_001638_260 Hb_000196_050 Hb_000196_050 Hb_002316_060--Hb_000196_050 Hb_003943_130 Hb_003943_130 Hb_002316_060--Hb_003943_130 Hb_001369_640 Hb_001369_640 Hb_002316_060--Hb_001369_640 Hb_001314_100 Hb_001314_100 Hb_002316_060--Hb_001314_100 Hb_001946_210 Hb_001946_210 Hb_002316_060--Hb_001946_210 Hb_003641_020--Hb_012368_020 Hb_000062_650 Hb_000062_650 Hb_003641_020--Hb_000062_650 Hb_003641_020--Hb_001638_260 Hb_003641_020--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_003641_020--Hb_012573_070 Hb_000975_320 Hb_000975_320 Hb_012368_020--Hb_000975_320 Hb_005511_160 Hb_005511_160 Hb_012368_020--Hb_005511_160 Hb_012368_020--Hb_001314_100 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020 Hb_002713_070 Hb_002713_070 Hb_004129_040--Hb_002713_070 Hb_005736_060 Hb_005736_060 Hb_004129_040--Hb_005736_060 Hb_004129_040--Hb_000307_090 Hb_000111_340 Hb_000111_340 Hb_004129_040--Hb_000111_340 Hb_000136_170 Hb_000136_170 Hb_004129_040--Hb_000136_170 Hb_000307_090--Hb_005736_060 Hb_159809_020 Hb_159809_020 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_000307_090--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_000307_090--Hb_003599_040 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43373 1.97834 1.26883 1.25335 1.71882 3.10365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42224 8.75327 2.41327 1.18906 0.934271

CAGE analysis