Hb_000439_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig439: 92811-93653
Sequence    

Annotation

kegg
ID rcu:RCOM_0799320
description Transcriptional factor TINY, putative
nr
ID XP_012077358.1
description PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
swissprot
ID Q9LYD3
description Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
trembl
ID A0A067KPE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07721 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dehydration-responsive element-binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000439_020 0.0 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
2 Hb_004712_200 0.149431784 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
3 Hb_006483_120 0.1505397198 - - DNA binding protein, putative [Ricinus communis]
4 Hb_010620_030 0.1505842528 - - beta-amyrin synthase [Euphorbia tirucalli]
5 Hb_010174_100 0.177447383 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
6 Hb_000552_010 0.187725579 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
7 Hb_042463_010 0.1891234394 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
8 Hb_013420_060 0.1892273458 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
9 Hb_002814_010 0.1920835406 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
10 Hb_015234_010 0.1926696047 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
11 Hb_005779_090 0.1931658653 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
12 Hb_000029_380 0.1937449861 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001276_050 0.1940455176 desease resistance Gene Name: NB-ARC NBS-LRR resistance-like protein 1O [Medicago truncatula]
14 Hb_004068_010 0.1951271573 - - beta-amyrin synthase [Euphorbia tirucalli]
15 Hb_004713_020 0.1953799695 - - -
16 Hb_007933_030 0.1960676455 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
17 Hb_008226_010 0.1963191039 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
18 Hb_182651_020 0.1974862275 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_007413_030 0.2003906385 - - kinase, putative [Ricinus communis]
20 Hb_000574_330 0.2017473759 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000439_020 Hb_000439_020 Hb_004712_200 Hb_004712_200 Hb_000439_020--Hb_004712_200 Hb_006483_120 Hb_006483_120 Hb_000439_020--Hb_006483_120 Hb_010620_030 Hb_010620_030 Hb_000439_020--Hb_010620_030 Hb_010174_100 Hb_010174_100 Hb_000439_020--Hb_010174_100 Hb_000552_010 Hb_000552_010 Hb_000439_020--Hb_000552_010 Hb_042463_010 Hb_042463_010 Hb_000439_020--Hb_042463_010 Hb_000966_040 Hb_000966_040 Hb_004712_200--Hb_000966_040 Hb_001377_060 Hb_001377_060 Hb_004712_200--Hb_001377_060 Hb_000975_050 Hb_000975_050 Hb_004712_200--Hb_000975_050 Hb_001266_160 Hb_001266_160 Hb_004712_200--Hb_001266_160 Hb_009692_040 Hb_009692_040 Hb_004712_200--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_004712_200--Hb_000193_220 Hb_182651_020 Hb_182651_020 Hb_006483_120--Hb_182651_020 Hb_006483_120--Hb_010620_030 Hb_006483_120--Hb_042463_010 Hb_000574_330 Hb_000574_330 Hb_006483_120--Hb_000574_330 Hb_007793_030 Hb_007793_030 Hb_006483_120--Hb_007793_030 Hb_001124_230 Hb_001124_230 Hb_010620_030--Hb_001124_230 Hb_010620_030--Hb_000552_010 Hb_003849_070 Hb_003849_070 Hb_010620_030--Hb_003849_070 Hb_000056_110 Hb_000056_110 Hb_010620_030--Hb_000056_110 Hb_034507_050 Hb_034507_050 Hb_010174_100--Hb_034507_050 Hb_010174_100--Hb_000056_110 Hb_000787_210 Hb_000787_210 Hb_010174_100--Hb_000787_210 Hb_000208_270 Hb_000208_270 Hb_010174_100--Hb_000208_270 Hb_002814_010 Hb_002814_010 Hb_010174_100--Hb_002814_010 Hb_001252_030 Hb_001252_030 Hb_010174_100--Hb_001252_030 Hb_001832_170 Hb_001832_170 Hb_000552_010--Hb_001832_170 Hb_002400_300 Hb_002400_300 Hb_000552_010--Hb_002400_300 Hb_000920_100 Hb_000920_100 Hb_000552_010--Hb_000920_100 Hb_000176_050 Hb_000176_050 Hb_000552_010--Hb_000176_050 Hb_001221_240 Hb_001221_240 Hb_000552_010--Hb_001221_240 Hb_016734_040 Hb_016734_040 Hb_042463_010--Hb_016734_040 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_042463_010--Hb_001221_240 Hb_042463_010--Hb_000920_100 Hb_169948_010 Hb_169948_010 Hb_042463_010--Hb_169948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.62577 4.63476 9.39117 25.7067 2.06894 4.77944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.881911 0.297211 0.0900186 6.86519 84.5464

CAGE analysis