Hb_000441_090

Information

Type -
Description -
Location Contig441: 104403-116642
Sequence    

Annotation

kegg
ID rcu:RCOM_1338890
description hypothetical protein
nr
ID XP_012075635.1
description PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
swissprot
ID Q8R3Q2
description Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Mus musculus GN=Ppp6r2 PE=1 SV=1
trembl
ID A0A067KFD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09229 PE=4 SV=1
Gene Ontology
ID GO:0005774
description serine threonine-protein phosphatase 6 regulatory subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42624: 90183-116472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_090 0.0 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
2 Hb_000258_070 0.0512305375 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
3 Hb_003517_040 0.0584578413 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
4 Hb_000317_100 0.0610358438 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
5 Hb_005215_010 0.0613346213 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
6 Hb_002027_080 0.061709268 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
7 Hb_003040_050 0.0623807606 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
8 Hb_000773_040 0.0645615622 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
9 Hb_000347_430 0.0648950777 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
10 Hb_004679_030 0.0671765657 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
11 Hb_015807_050 0.0673224532 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_001789_110 0.0683211924 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000174_270 0.0688437648 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
14 Hb_004003_040 0.0690339211 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_001712_060 0.0691208563 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
16 Hb_002897_090 0.0693850689 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012760_100 0.0697620556 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
18 Hb_000720_050 0.070030368 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
19 Hb_002263_020 0.0701391605 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_002890_130 0.0712498139 - - tip120, putative [Ricinus communis]

Gene co-expression network

sample Hb_000441_090 Hb_000441_090 Hb_000258_070 Hb_000258_070 Hb_000441_090--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_002027_080 Hb_002027_080 Hb_000441_090--Hb_002027_080 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_002849_130 Hb_002849_130 Hb_000258_070--Hb_002849_130 Hb_000340_530 Hb_000340_530 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000347_430 Hb_000347_430 Hb_000258_070--Hb_000347_430 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_000317_100--Hb_005215_010 Hb_002890_130 Hb_002890_130 Hb_000317_100--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_005215_010--Hb_002890_130 Hb_005215_010--Hb_011819_020 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.8668 13.2864 11.5761 15.888 13.3559 12.8809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.62539 10.0326 10.3213 11.8672 20.1056

CAGE analysis