Hb_000441_110

Information

Type -
Description -
Location Contig441: 135254-135988
Sequence    

Annotation

kegg
ID rcu:RCOM_1338770
description hypothetical protein
nr
ID XP_012087808.1
description PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LPK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24019 PE=4 SV=1
Gene Ontology
ID GO:0016301
description copper ion binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42628: 135037-136165 , PASA_asmbl_42629: 132642-136014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_110 0.0 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
2 Hb_003540_240 0.0683547087 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
3 Hb_011671_100 0.0786343258 - - 60S ribosomal protein L15 [Populus trichocarpa]
4 Hb_006478_150 0.0824335549 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
5 Hb_002056_050 0.0831065016 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
6 Hb_004567_120 0.0853754323 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
7 Hb_004453_020 0.0878214961 - - unnamed protein product [Vitis vinifera]
8 Hb_010068_020 0.0884788473 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
9 Hb_000384_100 0.0888368534 - - hydrolase, putative [Ricinus communis]
10 Hb_004127_020 0.0890968972 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
11 Hb_000479_090 0.0900498974 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
12 Hb_004143_150 0.0900739544 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
13 Hb_000169_040 0.0903554717 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
14 Hb_000172_320 0.0906082279 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
15 Hb_000920_110 0.0906127287 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
16 Hb_001863_430 0.0906989789 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
17 Hb_000265_050 0.0918241887 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
18 Hb_002676_090 0.0918462314 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
19 Hb_001545_170 0.0934078148 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
20 Hb_015279_010 0.099164671 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_110 Hb_000441_110 Hb_003540_240 Hb_003540_240 Hb_000441_110--Hb_003540_240 Hb_011671_100 Hb_011671_100 Hb_000441_110--Hb_011671_100 Hb_006478_150 Hb_006478_150 Hb_000441_110--Hb_006478_150 Hb_002056_050 Hb_002056_050 Hb_000441_110--Hb_002056_050 Hb_004567_120 Hb_004567_120 Hb_000441_110--Hb_004567_120 Hb_004453_020 Hb_004453_020 Hb_000441_110--Hb_004453_020 Hb_003540_240--Hb_002056_050 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360 Hb_006478_150--Hb_004567_120 Hb_004216_050 Hb_004216_050 Hb_006478_150--Hb_004216_050 Hb_033642_080 Hb_033642_080 Hb_006478_150--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_006478_150--Hb_091433_020 Hb_006478_150--Hb_000417_360 Hb_000920_110 Hb_000920_110 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070 Hb_004567_120--Hb_004216_050 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_004102_110 Hb_004102_110 Hb_004453_020--Hb_004102_110 Hb_002518_080 Hb_002518_080 Hb_004453_020--Hb_002518_080 Hb_000667_070 Hb_000667_070 Hb_004453_020--Hb_000667_070 Hb_004453_020--Hb_011671_100 Hb_026527_050 Hb_026527_050 Hb_004453_020--Hb_026527_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5912 12.7243 9.74803 11.7167 10.3657 14.6196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9692 50.1919 17.2824 17.2409 14.7876

CAGE analysis