Hb_000441_120

Information

Type -
Description -
Location Contig441: 136568-138247
Sequence    

Annotation

kegg
ID vvi:100265303
description DNA-damage-repair/toleration protein DRT111, chloroplastic
nr
ID XP_012075629.1
description PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID P42698
description DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2
trembl
ID A0A067KIU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09226 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-damage-repair toleration protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42630: 136447-136970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_120 0.0 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_006420_040 0.0499278462 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
3 Hb_000165_040 0.0571407442 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
4 Hb_003206_130 0.0582031919 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
5 Hb_000207_180 0.0588208046 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
6 Hb_000395_130 0.0602347128 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_009270_020 0.0609108259 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
8 Hb_000696_230 0.0621129405 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
9 Hb_000473_110 0.0627890838 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
10 Hb_001550_060 0.0642136394 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
11 Hb_000329_370 0.0648914095 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
12 Hb_001814_030 0.0656031166 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
13 Hb_000975_040 0.0659963887 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
14 Hb_012194_030 0.0660986139 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
15 Hb_017862_020 0.0667683279 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
16 Hb_000011_100 0.0678353591 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
17 Hb_162275_050 0.0687069083 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
18 Hb_000731_270 0.0689076988 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
19 Hb_005867_070 0.069436261 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000614_210 0.0694474207 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_120 Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_006420_040--Hb_000025_320 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_005867_070 Hb_005867_070 Hb_000165_040--Hb_005867_070 Hb_000006_040 Hb_000006_040 Hb_000165_040--Hb_000006_040 Hb_000935_010 Hb_000935_010 Hb_000165_040--Hb_000935_010 Hb_000174_170 Hb_000174_170 Hb_000165_040--Hb_000174_170 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_003206_130--Hb_001550_060 Hb_003470_080 Hb_003470_080 Hb_003206_130--Hb_003470_080 Hb_159558_010 Hb_159558_010 Hb_003206_130--Hb_159558_010 Hb_000614_210 Hb_000614_210 Hb_003206_130--Hb_000614_210 Hb_000207_180--Hb_009270_020 Hb_017862_020 Hb_017862_020 Hb_000207_180--Hb_017862_020 Hb_000347_070 Hb_000347_070 Hb_000207_180--Hb_000347_070 Hb_000207_180--Hb_006420_040 Hb_000731_270 Hb_000731_270 Hb_000207_180--Hb_000731_270 Hb_000092_020 Hb_000092_020 Hb_000395_130--Hb_000092_020 Hb_001080_230 Hb_001080_230 Hb_000395_130--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000395_130--Hb_000003_190 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_001814_030 Hb_001814_030 Hb_009270_020--Hb_001814_030 Hb_000579_230 Hb_000579_230 Hb_009270_020--Hb_000579_230 Hb_007426_110 Hb_007426_110 Hb_009270_020--Hb_007426_110 Hb_000590_050 Hb_000590_050 Hb_009270_020--Hb_000590_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1233 19.1694 13.7939 10.751 20.6528 16.0929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.698 15.3342 13.3982 19.301 18.4342

CAGE analysis