Hb_000441_170

Information

Type -
Description -
Location Contig441: 227981-228391
Sequence    

Annotation

kegg
ID rcu:RCOM_1337980
description hypothetical protein
nr
ID XP_012075617.1
description PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_D21.ab1: 228428-228720 , 035_D14.ab1: 227934-228720

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_170 0.0 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
2 Hb_002900_070 0.067238981 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002232_400 0.0793190341 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
4 Hb_006006_070 0.0850415544 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_002272_160 0.0877116986 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_098795_010 0.0967316357 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
7 Hb_076895_020 0.0980314271 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
8 Hb_000567_310 0.0980580577 - - Miraculin precursor, putative [Ricinus communis]
9 Hb_000175_480 0.0992714987 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
10 Hb_000758_030 0.0999857745 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
11 Hb_002110_270 0.100846429 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
12 Hb_000948_070 0.1011000038 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
13 Hb_003052_070 0.1052290117 - - PREDICTED: peroxidase 11 [Jatropha curcas]
14 Hb_000556_140 0.1077255159 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
15 Hb_000539_080 0.1106632459 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
16 Hb_003786_060 0.1114911234 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
17 Hb_001405_100 0.1140198886 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
18 Hb_027288_010 0.1151006279 - - mutt domain protein, putative [Ricinus communis]
19 Hb_006538_050 0.1172566053 - - hypothetical protein RCOM_1308310 [Ricinus communis]
20 Hb_127743_030 0.120621406 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000441_170 Hb_000441_170 Hb_002900_070 Hb_002900_070 Hb_000441_170--Hb_002900_070 Hb_002232_400 Hb_002232_400 Hb_000441_170--Hb_002232_400 Hb_006006_070 Hb_006006_070 Hb_000441_170--Hb_006006_070 Hb_002272_160 Hb_002272_160 Hb_000441_170--Hb_002272_160 Hb_098795_010 Hb_098795_010 Hb_000441_170--Hb_098795_010 Hb_076895_020 Hb_076895_020 Hb_000441_170--Hb_076895_020 Hb_000948_070 Hb_000948_070 Hb_002900_070--Hb_000948_070 Hb_002900_070--Hb_006006_070 Hb_002900_070--Hb_002232_400 Hb_002110_270 Hb_002110_270 Hb_002900_070--Hb_002110_270 Hb_002900_070--Hb_076895_020 Hb_002232_400--Hb_006006_070 Hb_002232_400--Hb_076895_020 Hb_002232_370 Hb_002232_370 Hb_002232_400--Hb_002232_370 Hb_000438_190 Hb_000438_190 Hb_002232_400--Hb_000438_190 Hb_006006_070--Hb_002110_270 Hb_006006_070--Hb_076895_020 Hb_000758_030 Hb_000758_030 Hb_006006_070--Hb_000758_030 Hb_000539_080 Hb_000539_080 Hb_006006_070--Hb_000539_080 Hb_027288_010 Hb_027288_010 Hb_002272_160--Hb_027288_010 Hb_007483_030 Hb_007483_030 Hb_002272_160--Hb_007483_030 Hb_003052_070 Hb_003052_070 Hb_002272_160--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_002272_160--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_002272_160--Hb_000567_310 Hb_006538_050 Hb_006538_050 Hb_098795_010--Hb_006538_050 Hb_098795_010--Hb_002272_160 Hb_000003_470 Hb_000003_470 Hb_098795_010--Hb_000003_470 Hb_003786_060 Hb_003786_060 Hb_098795_010--Hb_003786_060 Hb_098795_010--Hb_003052_070 Hb_076895_020--Hb_000539_080 Hb_076895_020--Hb_002110_270 Hb_027141_010 Hb_027141_010 Hb_076895_020--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_076895_020--Hb_000984_080 Hb_076895_020--Hb_000758_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.319875 5.48705 1.86866 3.57535 0.0753981 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 27.063 0.263634

CAGE analysis