Hb_000441_180

Information

Type -
Description -
Location Contig441: 246713-251307
Sequence    

Annotation

kegg
ID rcu:RCOM_1337460
description Early endosome antigen, putative
nr
ID XP_002523187.1
description Early endosome antigen, putative [Ricinus communis]
swissprot
ID Q5BQN5
description WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1
trembl
ID B9SB27
description Early endosome antigen, putative OS=Ricinus communis GN=RCOM_1337460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42640: 245911-252405 , PASA_asmbl_42641: 245840-252405 , PASA_asmbl_42642: 251291-251541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_180 0.0 - - Early endosome antigen, putative [Ricinus communis]
2 Hb_001473_090 0.0812131292 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
3 Hb_102269_010 0.0901652237 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
4 Hb_001541_090 0.0920954429 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_006445_010 0.0952672046 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
6 Hb_001025_080 0.0953953585 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
7 Hb_007426_150 0.0960152901 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
8 Hb_000029_320 0.097105305 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
9 Hb_000768_190 0.0977325562 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_002273_130 0.0981988398 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
11 Hb_000209_070 0.0996612759 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
12 Hb_000059_150 0.1002276649 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
13 Hb_000785_040 0.1005651032 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
14 Hb_008595_010 0.1005651035 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
15 Hb_002070_070 0.1024708389 - - ATP binding protein, putative [Ricinus communis]
16 Hb_004218_240 0.1026872737 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
17 Hb_010925_020 0.1029898812 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
18 Hb_000037_110 0.1041175959 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
19 Hb_000343_190 0.1042505613 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
20 Hb_000021_040 0.1051727776 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000441_180 Hb_000441_180 Hb_001473_090 Hb_001473_090 Hb_000441_180--Hb_001473_090 Hb_102269_010 Hb_102269_010 Hb_000441_180--Hb_102269_010 Hb_001541_090 Hb_001541_090 Hb_000441_180--Hb_001541_090 Hb_006445_010 Hb_006445_010 Hb_000441_180--Hb_006445_010 Hb_001025_080 Hb_001025_080 Hb_000441_180--Hb_001025_080 Hb_007426_150 Hb_007426_150 Hb_000441_180--Hb_007426_150 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_003656_180 Hb_003656_180 Hb_102269_010--Hb_003656_180 Hb_102269_010--Hb_001473_090 Hb_001811_120 Hb_001811_120 Hb_102269_010--Hb_001811_120 Hb_000475_020 Hb_000475_020 Hb_102269_010--Hb_000475_020 Hb_003029_130 Hb_003029_130 Hb_102269_010--Hb_003029_130 Hb_000160_290 Hb_000160_290 Hb_102269_010--Hb_000160_290 Hb_002273_130 Hb_002273_130 Hb_001541_090--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001541_090--Hb_001341_120 Hb_030131_040 Hb_030131_040 Hb_001541_090--Hb_030131_040 Hb_008103_040 Hb_008103_040 Hb_001541_090--Hb_008103_040 Hb_001488_410 Hb_001488_410 Hb_001541_090--Hb_001488_410 Hb_003464_020 Hb_003464_020 Hb_001541_090--Hb_003464_020 Hb_000544_010 Hb_000544_010 Hb_006445_010--Hb_000544_010 Hb_006445_010--Hb_002749_110 Hb_006445_010--Hb_007426_150 Hb_000429_220 Hb_000429_220 Hb_006445_010--Hb_000429_220 Hb_000152_260 Hb_000152_260 Hb_006445_010--Hb_000152_260 Hb_028308_010 Hb_028308_010 Hb_006445_010--Hb_028308_010 Hb_001025_080--Hb_000785_040 Hb_004096_100 Hb_004096_100 Hb_001025_080--Hb_004096_100 Hb_004102_140 Hb_004102_140 Hb_001025_080--Hb_004102_140 Hb_000007_280 Hb_000007_280 Hb_001025_080--Hb_000007_280 Hb_001025_080--Hb_001473_090 Hb_003044_020 Hb_003044_020 Hb_001025_080--Hb_003044_020 Hb_001195_560 Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_000933_020 Hb_000933_020 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_007426_150--Hb_000429_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3617 11.7244 9.36465 12.3477 28.4162 33.8581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3136 5.56305 7.90798 11.4585 13.2704

CAGE analysis