Hb_000441_200

Information

Type -
Description -
Location Contig441: 263317-271283
Sequence    

Annotation

kegg
ID rcu:RCOM_1336800
description hypothetical protein
nr
ID XP_012075601.1
description PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C5Q8
description Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1 PE=1 SV=1
trembl
ID A0A067KFL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09210 PE=4 SV=1
Gene Ontology
ID GO:0008171
description small rna 2 -o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42644: 267520-267776 , PASA_asmbl_42645: 269795-270247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_200 0.0 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
2 Hb_026198_070 0.0585629801 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
3 Hb_000081_160 0.0684891723 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
4 Hb_000111_320 0.0724803109 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
5 Hb_000466_140 0.0728366554 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
6 Hb_000254_090 0.0729018707 - - PREDICTED: la protein 2 [Jatropha curcas]
7 Hb_001318_280 0.0734928274 - - Protein FAM18B, putative [Ricinus communis]
8 Hb_002553_060 0.0736017133 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
9 Hb_001021_150 0.0740653379 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
10 Hb_007017_030 0.0745202127 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
11 Hb_002110_190 0.0748876723 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
12 Hb_001489_090 0.0756555106 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
13 Hb_156279_020 0.077536173 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_000054_090 0.0778841963 - - zinc finger protein, putative [Ricinus communis]
15 Hb_029510_050 0.0781955633 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
16 Hb_004254_090 0.0787619385 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
17 Hb_008847_030 0.0789346264 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
18 Hb_006274_030 0.079392565 - - F-box and wd40 domain protein, putative [Ricinus communis]
19 Hb_000640_170 0.0794309296 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
20 Hb_031862_100 0.0799815349 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000441_200 Hb_000441_200 Hb_026198_070 Hb_026198_070 Hb_000441_200--Hb_026198_070 Hb_000081_160 Hb_000081_160 Hb_000441_200--Hb_000081_160 Hb_000111_320 Hb_000111_320 Hb_000441_200--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_000441_200--Hb_000466_140 Hb_000254_090 Hb_000254_090 Hb_000441_200--Hb_000254_090 Hb_001318_280 Hb_001318_280 Hb_000441_200--Hb_001318_280 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_001252_130 Hb_001252_130 Hb_000081_160--Hb_001252_130 Hb_000215_110 Hb_000215_110 Hb_000081_160--Hb_000215_110 Hb_002641_060 Hb_002641_060 Hb_000081_160--Hb_002641_060 Hb_000081_160--Hb_001318_280 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_001599_040 Hb_001599_040 Hb_000081_160--Hb_001599_040 Hb_000392_430 Hb_000392_430 Hb_000111_320--Hb_000392_430 Hb_000111_320--Hb_000466_140 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_002811_180 Hb_002811_180 Hb_000111_320--Hb_002811_180 Hb_000466_140--Hb_001247_310 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_054865_150 Hb_054865_150 Hb_000254_090--Hb_054865_150 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_008616_050 Hb_008616_050 Hb_001318_280--Hb_008616_050 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_001318_280--Hb_002641_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72789 1.15323 1.45627 2.38523 2.43185 1.93593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65836 2.57556 1.95828 2.46665 2.42427

CAGE analysis